RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 QPCTQ16769 361 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 MUM1Q2TAK8 710 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 GXYLT1Q4G148 440 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 KHDC1Q4VXA5 237 aaKnown RBP7.59□□□□□ -1.19
USP54-211ENST00000474929 C2CD6Q53TS8 623 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 FIGNQ5HY92 759 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 EMC4Q5J8M3 183 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 RNFT1Q5M7Z0 435 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 C10orf62Q5T681 223 aaPredicted RBP7.59□□□□□ -1.19
USP54-211ENST00000474929 C1orf185Q5T7R7 199 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 ZNF585AQ6P3V2 769 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 TMEM220Q6QAJ8 160 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 FIGLAQ6QHK4 219 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 TMEM205Q6UW68 189 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 MAATS1Q7Z4T9 603 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 TMC3Q7Z5M5 1100 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 FAM71AQ8IYT1 594 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 ZFP62Q8NB50 900 aaPredicted RBP7.59□□□□□ -1.19
USP54-211ENST00000474929 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.59□□□□□ -1.19
USP54-211ENST00000474929 SLC22A18Q96BI1 424 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 LINC00615Q96LM1 132 aaPredicted RBP7.59□□□□□ -1.19
USP54-211ENST00000474929 CSPG4P5Q96PW8 444 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 SMIM14Q96QK8 99 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 GPR63Q9BZJ6 419 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 CXorf56Q9H5V9 222 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 VPS37BQ9H9H4 285 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 MKKSQ9NPJ1 570 aaPredicted RBP7.59□□□□□ -1.19
USP54-211ENST00000474929 LUC7LQ9NQ29 371 aaKnown RBP7.59□□□□□ -1.19
USP54-211ENST00000474929 SMOXQ9NWM0 555 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 ANKRD10Q9NXR5 420 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 FAM215AQ9Y5M1 114 aa7.59□□□□□ -1.19
USP54-211ENST00000474929 SVEP1Q4LDE5 3571 aa7.59□□□□□ -1.2
USP54-211ENST00000474929 NPIPA2E9PIF3 369 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 NPIPA3F8WFD2 350 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 HCRTR1O43613 425 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 SRPX2O60687 465 aaPredicted RBP7.58□□□□□ -1.2
USP54-211ENST00000474929 SOX30O94993 753 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 FKBP9O95302 570 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 FGFR1OPO95684 399 aaKnown RBP7.58□□□□□ -1.2
USP54-211ENST00000474929 PRLP01236 227 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 SLC4A1P02730 911 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 TPH1P17752 444 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 MSH3P20585 1137 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 CMA1P23946 247 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 AKT1P31749 480 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 ZNF165P49910 485 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 AGTR2P50052 363 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 PPP2R5EQ16537 467 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 ACKR1Q16570 336 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 EXOC3L4Q17RC7 722 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 BCL7AQ4VC05 210 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 ATP13A5Q4VNC0 1218 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 WLSQ5T9L3 541 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 GJB7Q6PEY0 223 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 OTOAQ7RTW8 1153 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 TRIM73Q86UV7 250 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 CRLF3Q8IUI8 442 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 LIX1LQ8IVB5 337 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 RASGEF1AQ8N9B8 481 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 M1APQ8TC57 530 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 CPA5Q8WXQ8 436 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 NTNG2Q96CW9 530 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 GSDMAQ96QA5 445 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 OR2A14Q96R47 310 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 SMC6Q96SB8 1091 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 SELENOSQ9BQE4 189 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 HGH1Q9BTY7 390 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 TGIF2Q9GZN2 237 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 CLSTN2Q9H4D0 955 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 TRIM45Q9H8W5 580 aaPredicted RBP7.58□□□□□ -1.2
USP54-211ENST00000474929 MMP25Q9NPA2 562 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 PNPLA3Q9NST1 481 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 ZNF629Q9UEG4 869 aaPredicted RBP7.58□□□□□ -1.2
USP54-211ENST00000474929 POLG2Q9UHN1 485 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 HPSEQ9Y251 543 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 ZNF711Q9Y462 761 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 TTLL3Q9Y4R7 772 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 PCDHGB3Q9Y5G1 929 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 MAU2Q9Y6X3 613 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 USF3Q68DE3 2245 aa7.58□□□□□ -1.2
USP54-211ENST00000474929 MPDZO75970 2070 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 H3BRJ5 948 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 QSOX1O00391 747 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 FCHO1O14526 889 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 CALB1P05937 261 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 ANXA5P08758 320 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 CHRM5P08912 532 aaPredicted RBP7.57□□□□□ -1.2
USP54-211ENST00000474929 ERVK-10P10266 1014 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 RALBP11234 206 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 BMP5P22003 454 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 AMPD1P23109 780 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 NSFP46459 744 aaKnown RBP7.57□□□□□ -1.2
USP54-211ENST00000474929 PMS1P54277 932 aaKnown RBP7.57□□□□□ -1.2
USP54-211ENST00000474929 EMP3P54852 163 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 VSX2P58304 361 aaPredicted RBP7.57□□□□□ -1.2
USP54-211ENST00000474929 TAP2Q03519 686 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 RPA4Q13156 261 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 VEZF1Q14119 521 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 MESDQ14696 234 aa7.57□□□□□ -1.2
USP54-211ENST00000474929 NAA25Q14CX7 972 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms