RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SORBS2O94875 1100 aaKnown RBP17.79■□□□□ 0.44
COL7A1-209ENST00000474432 ATXN8OSP0DMR3 200 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 CHRM3P20309 590 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 CCNFP41002 786 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 CTBP1Q13363 440 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 KLHL38Q2WGJ6 581 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 ZC3H12BQ5HYM0 836 aaKnown RBP17.79■□□□□ 0.44
COL7A1-209ENST00000474432 ZNF470Q6ECI4 717 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 FRMPD2BQ6IN97 320 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 CASC4Q6P4E1 433 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 TTC23LQ6PF05 361 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 TTLL10Q6ZVT0 673 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 RAB43Q86YS6 212 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 GSDMBQ8TAX9 411 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 SKA2Q8WVK7 121 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-209ENST00000474432 SMAD5Q99717 465 aaKnown RBP17.79■□□□□ 0.44
COL7A1-209ENST00000474432 TXLNGQ9NUQ3 528 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 INTS7Q9NVH2 962 aaKnown RBP17.79■□□□□ 0.44
COL7A1-209ENST00000474432 SPATA7Q9P0W8 599 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 MRFAP1Q9Y605 127 aa17.79■□□□□ 0.44
COL7A1-209ENST00000474432 MDC1Q14676 2089 aaKnown RBP17.78■□□□□ 0.44
COL7A1-209ENST00000474432 LOC105369274A0A096LPK9 316 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 LOC102723532A0A0G2JNH3 316 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 A0A1B0GX78 115 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 A6NL46 340 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 MYO1CO00159 1063 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 DSCR3O14972 297 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 KIF5CO60282 957 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 PAMP19021 973 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 ALAS2P22557 587 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 FOLR3P41439 243 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 ARSFP54793 590 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 RNASEH2BQ5TBB1 312 aaKnown RBP17.78■□□□□ 0.44
COL7A1-209ENST00000474432 FBXO42Q6P3S6 717 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 CYHR1Q6ZMK1 362 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 OVCH1Q7RTY7 1134 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 OR4N4Q8N0Y3 316 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 RBMXL3Q8N7X1 1067 aaKnown RBP17.78■□□□□ 0.44
COL7A1-209ENST00000474432 Q8NA96 180 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 OR9A1PQ8NGU1 263 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 PTERQ96BW5 349 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 SLC6A20Q9NP91 592 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 FBXO6Q9NRD1 293 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-209ENST00000474432 CUTCQ9NTM9 273 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 IRAK4Q9NWZ3 460 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 NDOR1Q9UHB4 597 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 GPN3Q9UHW5 284 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-209ENST00000474432 PCDHGB7Q9Y5F8 929 aa17.78■□□□□ 0.44
COL7A1-209ENST00000474432 RP1L1Q8IWN7 2480 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-209ENST00000474432 IGKV1-8A0A0C4DH67 115 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 OR2A25A4D2G3 310 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 NRDCO43847 1150 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 USP1O94782 785 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 SLC1A2P43004 574 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 FNTAP49354 379 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 RRADP55042 308 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 TCTE1Q5JU00 501 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 DCAF10Q5QP82 559 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 WASHC2DQ5SRD0 308 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 RNF44Q7L0R7 432 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 DLG3Q92796 817 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 FKBP10Q96AY3 582 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 FOPNLQ96NB1 174 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 IP6K3Q96PC2 410 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 PKP4Q99569 1192 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 SPSB2Q99619 263 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 SELENOSQ9BQE4 189 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 SLC26A1Q9H2B4 701 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 P4HTMQ9NXG6 502 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 SAMD15Q9P1V8 674 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 KLHL42Q9P2K6 505 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 SNX12Q9UMY4 172 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 ZNF451Q9Y4E5 1061 aa17.77■□□□□ 0.44
COL7A1-209ENST00000474432 PFDN6O15212 129 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 SRPX2O60687 465 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-209ENST00000474432 CD63P08962 238 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 VSX2P58304 361 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-209ENST00000474432 TIAL1Q01085 375 aaKnown RBP eCLIP17.76■□□□□ 0.43
COL7A1-209ENST00000474432 RAPSNQ13702 412 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 GRM7Q14831 915 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 NKG7Q16617 165 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 YOD1Q5VVQ6 348 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-209ENST00000474432 JMJD6Q6NYC1 403 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-209ENST00000474432 SUSD1Q6UWL2 747 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 NEK10Q6ZWH5 1172 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 LRRC56Q8IYG6 542 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-209ENST00000474432 MAGEC3Q8TD91 643 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 NAP1L3Q99457 506 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-209ENST00000474432 DPH7Q9BTV6 452 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 ACAT2Q9BWD1 397 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 GRPEL1Q9HAV7 217 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 GPR83Q9NYM4 423 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 VPS9D1Q9Y2B5 631 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 MAP4K5Q9Y4K4 846 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 FAM169AQ9Y6X4 670 aa17.76■□□□□ 0.43
COL7A1-209ENST00000474432 PRRC2CQ9Y520 2896 aaKnown RBP17.76■□□□□ 0.43
COL7A1-209ENST00000474432 USP9YO00507 2555 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-209ENST00000474432 A0A0J9YVX5 310 aa17.75■□□□□ 0.43
COL7A1-209ENST00000474432 CES2O00748 559 aa17.75■□□□□ 0.43
COL7A1-209ENST00000474432 HAUS5O94927 633 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms