RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CISD2Q8N5K1 135 aaKnown RBP18.92■□□□□ 0.62
COL9A3-210ENST00000472880 METTL27Q8N6F8 245 aaPredicted RBP18.92■□□□□ 0.62
COL9A3-210ENST00000472880 HMGCLL1Q8TB92 370 aa18.92■□□□□ 0.62
COL9A3-210ENST00000472880 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.92■□□□□ 0.62
COL9A3-210ENST00000472880 ZNF285Q96NJ3 590 aa18.92■□□□□ 0.62
COL9A3-210ENST00000472880 SPSB2Q99619 263 aa18.92■□□□□ 0.62
COL9A3-210ENST00000472880 SYBUQ9NX95 663 aa18.92■□□□□ 0.62
COL9A3-210ENST00000472880 IL1RAPL1Q9NZN1 696 aa18.92■□□□□ 0.62
COL9A3-210ENST00000472880 SPATA7Q9P0W8 599 aa18.92■□□□□ 0.62
COL9A3-210ENST00000472880 CTSFQ9UBX1 484 aa18.92■□□□□ 0.62
COL9A3-210ENST00000472880 TSR3Q9UJK0 312 aaKnown RBP18.92■□□□□ 0.62
COL9A3-210ENST00000472880 DRG1Q9Y295 367 aaKnown RBP18.92■□□□□ 0.62
COL9A3-210ENST00000472880 ESPL1Q14674 2120 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 SPTAN1Q13813 2472 aaKnown RBP18.91■□□□□ 0.62
COL9A3-210ENST00000472880 FITM1A5D6W6 292 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 KRT87PA6NCN2 255 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 SOCS6O14544 535 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 SRPX2O60687 465 aaPredicted RBP18.91■□□□□ 0.62
COL9A3-210ENST00000472880 CTSVO60911 334 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 VAPBO95292 243 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 DDAH2O95865 285 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 FGGP02679 453 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 RBBP7Q16576 425 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 TUBB8Q3ZCM7 444 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 CCSMST1Q4G0I0 132 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 CTSL3PQ5NE16 218 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 SHISA6Q6ZSJ9 500 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 OR2L3Q8NG85 312 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 MFSD3Q96ES6 412 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 VPS50Q96JG6 964 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 KIFC1Q9BW19 673 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 SOX17Q9H6I2 414 aaPredicted RBP18.91■□□□□ 0.62
COL9A3-210ENST00000472880 ENAMQ9NRM1 1142 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 HS3ST3B1Q9Y662 390 aa18.91■□□□□ 0.62
COL9A3-210ENST00000472880 RP1L1Q8IWN7 2480 aaPredicted RBP18.91■□□□□ 0.62
COL9A3-210ENST00000472880 H3BMM5 538 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 ALOX12BO75342 701 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 RNF224P0DH78 156 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 ERVK-10P10266 1014 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 TPSB2P20231 275 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 ARNTP27540 789 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 FMO4P31512 558 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 OR1D4P47884 311 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 CDK16Q00536 496 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 NAA25Q14CX7 972 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 TPSAB1Q15661 275 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 TYSND1Q2T9J0 566 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 WASHC2DQ5SRD0 308 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 HIST2H2BCQ6DN03 193 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 LRRC8BQ6P9F7 803 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 CES3Q6UWW8 571 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 Q6ZS92 163 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 LPGAT1Q92604 370 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 INPP5DQ92835 1189 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 WDR77Q9BQA1 342 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-210ENST00000472880 ZBTB20Q9HC78 741 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-210ENST00000472880 LZTFL1Q9NQ48 299 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 SEMA3GQ9NS98 782 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 KLK4Q9Y5K2 254 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 COPG1Q9Y678 874 aaKnown RBP18.9■□□□□ 0.62
COL9A3-210ENST00000472880 MAU2Q9Y6X3 613 aa18.9■□□□□ 0.62
COL9A3-210ENST00000472880 A0A0J9YVX5 310 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 HYKKA2RU49 373 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 GOLGA8KD6RF30 607 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 GOLGA8TH3BQL2 631 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 NIPSNAP2O75323 286 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 ESR1P03372 595 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 ATP5DP30049 168 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 CMPK1P30085 196 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 KCNJ1P48048 391 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 GLRBP48167 497 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 ELOAQ14241 798 aaKnown RBP18.89■□□□□ 0.61
COL9A3-210ENST00000472880 FRMPD2BQ6IN97 320 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 RNF44Q7L0R7 432 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 OR2A1Q8NGT9 310 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 FAM136AQ96C01 138 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 BIRC8Q96P09 236 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 TCF12Q99081 682 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 CRB3Q9BUF7 120 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 SOX13Q9UN79 622 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 PCDHGA10Q9Y5H3 936 aa18.89■□□□□ 0.61
COL9A3-210ENST00000472880 SPTBN1Q01082 2364 aaKnown RBP18.89■□□□□ 0.61
COL9A3-210ENST00000472880 ANKRD12Q6UB98 2062 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 A1L4Q6 167 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 CBX6O95503 412 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 EIF2S1P05198 315 aaKnown RBP18.88■□□□□ 0.61
COL9A3-210ENST00000472880 PAMP19021 973 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 OGNP20774 298 aaKnown RBP18.88■□□□□ 0.61
COL9A3-210ENST00000472880 OCA2Q04671 838 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 AGAP7PQ5VUJ5 663 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 KIAA0930Q6ICG6 404 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-210ENST00000472880 PRMT9Q6P2P2 845 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 KIRREL2Q6UWL6 708 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 CUZD1Q86UP6 607 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 DTWD1Q8N5C7 304 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 PPP4R1Q8TF05 950 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 AGAP4Q96P64 663 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 ZFYVE21Q9BQ24 234 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 ACAT2Q9BWD1 397 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 ZNF304Q9HCX3 659 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms