RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 PTGISQ16647 500 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 DUSP7Q16829 419 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 EIF2S3LQ2VIR3 472 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MOGAT2Q3SYC2 334 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 BCL7AQ4VC05 210 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TNFAIP8L3Q5GJ75 292 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 AGBL2Q5U5Z8 902 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 CDC73Q6P1J9 531 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 BHLHB9Q6PI77 547 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ABHD15Q6UXT9 468 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 DCDC5Q6ZRR9 648 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ZAR1Q86SH2 424 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SFR1Q86XK3 245 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SCML4Q8N228 414 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 FAM109AQ8N4B1 249 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TRAM1L1Q8N609 369 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PCDH20Q8N6Y1 951 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 CDYL2Q8N8U2 506 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 AGBL3Q8NEM8 1001 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 OR6J1Q8NGC5 347 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 CD99L2Q8TCZ2 262 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 CSGALNACT1Q8TDX6 532 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 EDAQ92838 391 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MR1Q95460 341 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 DGCR14Q96DF8 476 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ALG14Q96F25 216 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MSLNLQ96KJ4 702 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 DBNDD2Q9BQY9 259 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 G6PC3Q9BUM1 346 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 DUSP26Q9BV47 211 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 IDI2Q9BXS1 227 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SEMA4CQ9C0C4 833 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 MFFQ9GZY8 342 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 RAB33BQ9H082 229 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 HDHD2Q9H0R4 259 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 EPC1Q9H2F5 836 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 TDRD3Q9H7E2 651 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 METTL7AQ9H8H3 244 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 GSN-AS1Q9NRJ2 163 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SIRT3Q9NTG7 399 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 COA4Q9NYJ1 87 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 GDE1Q9NZC3 331 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 GRHL1Q9NZI5 618 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 DAPK2Q9UIK4 370 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 POU2F3Q9UKI9 436 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 ARL2BPQ9Y2Y0 163 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 PRELID3BQ9Y3B1 194 aa4.69□□□□□ -1.66
CCDC88A-209ENST00000456975 SZT2Q5T011 3432 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 C2orf92A0A1B0GVN3 265 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SMIM30A4D0T7 59 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 VPS37CA5D8V6 355 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 USP27XA6NNY8 438 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC31A2O15432 143 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 OAZ2O95190 189 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 EFEMP2O95967 443 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 AK1P00568 194 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ETS2P15036 469 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 DDCP20711 480 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 MALP21145 153 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 NT5EP21589 574 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 HNRNPA2B1P22626 353 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 EPHB2P29323 1055 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ADORA1P30542 326 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CHRNA3P32297 505 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 OR3A3P47888 321 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC11A2P49281 568 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 LIG4P49917 911 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 BMXP51813 675 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SMSP52788 366 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 RTP1P59025 263 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 TIMM10P62072 90 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 HERVK_113P62684 666 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CDC42EP1Q00587 391 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 DBPQ10586 325 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SRSF5Q13243 272 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 DMP1Q13316 513 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CAPSQ13938 189 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 VEZF1Q14119 521 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 KCNMB1Q16558 191 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CAMK4Q16566 473 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 STX1AQ16623 288 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC9C1Q4G0N8 1177 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM35AQ53FP2 167 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ACAD10Q6JQN1 1059 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CYP20A1Q6UW02 462 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 IL20RBQ6UXL0 311 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 GPRIN3Q6ZVF9 776 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 NIPA1Q7RTP0 329 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 BHLHA15Q7RTS1 189 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PLPPR4Q7Z2D5 763 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF551Q7Z340 670 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ANKS1BQ7Z6G8 1248 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 KBTBD2Q8IY47 623 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CERS5Q8N5B7 392 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC25A41Q8N5S1 370 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 POGLUT1Q8NBL1 392 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PNPT1Q8TCS8 783 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ST7LQ8TDW4 575 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CHURC1Q8WUH1 139 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 MRPL48Q96GC5 212 aaKnown RBP4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms