RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 LIN7AO14910 233 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 KMOO15229 486 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CAPN5O15484 640 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 GRID2O43424 1007 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 SGTAO43765 313 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 TYROBPO43914 113 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 KLHL2O95198 593 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 DLGAP3O95886 979 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CBSLP0DN79 551 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 PRKAR1AP10644 381 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CREB1P16220 341 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CRHR1P34998 444 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CBSP35520 551 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 PGGT1BP53609 377 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 ATP6V0D1P61421 351 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 HHEXQ03014 270 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CDC20Q12834 499 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 LRP8Q14114 963 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 UBAP2LQ14157 1087 aaKnown RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CCDC153Q494R4 210 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 PLEKHS1Q5SXH7 462 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 ATP1A1-AS1Q5TC04 95 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 IYDQ6PHW0 289 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 PAQR3Q6TCH7 311 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CHST15Q7LFX5 561 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CENPLQ8N0S6 344 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 OR10G6Q8NH81 332 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 MGARPQ8TDB4 240 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 TCP10LQ8TDR4 215 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 SKA2Q8WVK7 121 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 NCSTNQ92542 709 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 AHCYL2Q96HN2 611 aaKnown RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 LINC00615Q96LM1 132 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 FAM111AQ96PZ2 611 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 TEFMQ96QE5 360 aaKnown RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 SLC30A3Q99726 388 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 TIMM29Q9BSF4 260 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 DERL2Q9GZP9 239 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 GPN2Q9H9Y4 310 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-208ENST00000437607 NMRAL1Q9HBL8 299 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 FBXO8Q9NRD0 319 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 LATS2Q9NRM7 1088 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 GRID1Q9ULK0 1009 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 CRYBG3Q68DQ2 2970 aa11.79□□□□□ -0.52
PTPRF-208ENST00000437607 RP1L1Q8IWN7 2480 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 NPEPPSL1A6NEC2 478 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 BTN3A1O00481 513 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 CHUKO15111 745 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 STK17BO94768 372 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 WISP3O95389 354 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 ACP5P13686 325 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 TFEBP19484 476 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 F8A1P23610 371 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 MAP4P27816 1152 aaKnown RBP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 AOAHP28039 575 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 CCR7P32248 378 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 GMPRP36959 345 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 GLRBP48167 497 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 TIAL1Q01085 375 aaKnown RBP eCLIP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 PLOD1Q02809 727 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 ABHD18Q0P651 414 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 HSPA14Q0VDF9 509 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 DEFB109BQ30KR1 87 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 HHATQ5VTY9 493 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 CEACAM20Q6UY09 585 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 CDHR3Q6ZTQ4 885 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 SH2D5Q6ZV89 423 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 FRA10AC1Q70Z53 315 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 ADAMTSL2Q86TH1 951 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 TAX1BP1Q86VP1 789 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 AMZ2Q86W34 360 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 C9orf43Q8TAL5 461 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 DYDC1Q8WWB3 177 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 ASZ1Q8WWH4 475 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 NXNL1Q96CM4 212 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 ABHD17AQ96GS6 310 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 TBC1D10AQ9BXI6 508 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 UNKQ9C0B0 810 aaKnown RBP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 ZMYND15Q9H091 742 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 MRPL46Q9H2W6 279 aaKnown RBP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 COG4Q9H9E3 785 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 IGSF5Q9NSI5 407 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 SIDT1Q9NXL6 827 aaKnown RBP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 SLC17A7Q9P2U7 560 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 XPR1Q9UBH6 696 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 KLHL3Q9UH77 587 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 ZNHIT2Q9UHR6 403 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 ANAPC2Q9UJX6 822 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 KCNK6Q9Y257 313 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 MRPS18BQ9Y676 258 aaKnown RBP11.78□□□□□ -0.52
PTPRF-208ENST00000437607 CENPEQ02224 2701 aa11.78□□□□□ -0.52
PTPRF-208ENST00000437607 ITPR2Q14571 2701 aa11.77□□□□□ -0.52
PTPRF-208ENST00000437607 CCDC189A1A4V9 331 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 MGAT4DA6NG13 374 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 POLR3GO15318 223 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 PLIN3O60664 434 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 POP7O75817 140 aaKnown RBP11.77□□□□□ -0.53
PTPRF-208ENST00000437607 RBP1P09455 135 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 F3P13726 295 aa11.77□□□□□ -0.53
PTPRF-208ENST00000437607 CD1DP15813 335 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms