RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 AGXTP21549 392 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 RFC2P35250 354 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 CLCN2P51788 898 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 LBX1P52954 281 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 PFN3P60673 137 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 GPR107Q5VW38 600 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 CES5AQ6NT32 575 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 FKBP9P1Q75LS8 142 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 C1orf52Q8N6N3 182 aaKnown RBP11.58□□□□□ -0.56
PTPRN-204ENST00000423636 MCOLN3Q8TDD5 553 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 CENPNQ96H22 339 aaPredicted RBP11.58□□□□□ -0.56
PTPRN-204ENST00000423636 TMEM106CQ9BVX2 250 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 TRIM54Q9BYV2 358 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 NTN4Q9HB63 628 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 SGK2Q9HBY8 427 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 IL36AQ9UHA7 158 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 TRBV5-4A0A0C4DH59 114 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 CYP17A1P05093 508 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 COX7A2P14406 83 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 PSMB5P28074 263 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 RPL5P46777 297 aaKnown RBP11.58□□□□□ -0.56
PTPRN-204ENST00000423636 RPS9P46781 194 aaKnown RBP11.58□□□□□ -0.56
PTPRN-204ENST00000423636 NRIP1P48552 1158 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 ATP4BP51164 291 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 MEP1AQ16819 746 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 ZNF284Q2VY69 593 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 PDCD4Q53EL6 469 aaKnown RBP11.58□□□□□ -0.56
PTPRN-204ENST00000423636 C9orf50Q5SZB4 431 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 ACBD5Q5T8D3 534 aaPredicted RBP11.58□□□□□ -0.56
PTPRN-204ENST00000423636 ZNF852Q6ZMS4 543 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 Q6ZPB1 254 aaPredicted RBP11.58□□□□□ -0.56
PTPRN-204ENST00000423636 SZRD1Q7Z422 152 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 THOC6Q86W42 341 aaKnown RBP11.58□□□□□ -0.56
PTPRN-204ENST00000423636 NEIL2Q969S2 332 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 LMLNQ96KR4 655 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 MRGPRX3Q96LB0 322 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 PPP3R2Q96LZ3 170 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 MYRFQ9Y2G1 1151 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 INSL6Q9Y581 213 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 OR1A2Q9Y585 309 aa11.58□□□□□ -0.56
PTPRN-204ENST00000423636 RECQL5O94762 991 aaPredicted RBP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 KRT6AP02538 564 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 KRT6BP04259 564 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 EPHA2P29317 976 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 OR1E2P47887 323 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 KRT6CP48668 564 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 LSM3P62310 102 aaKnown RBP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 CTBSQ01459 385 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 CHRNB3Q05901 458 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 PWP1Q13610 501 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 USP39Q53GS9 565 aaKnown RBP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 PDE12Q6L8Q7 609 aaKnown RBP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 AGTRAPQ6RW13 159 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 ZNF783Q6ZMS7 281 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 TFAP2CQ92754 450 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 PKP4Q99569 1192 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 RPP25Q9BUL9 199 aaKnown RBP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 LGR4Q9BXB1 951 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 DGCR6LQ9BY27 220 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 OSGEPL1Q9H4B0 414 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 AMBNQ9NP70 447 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 VNN3Q9NY84 501 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 ZIM2Q9NZV7 527 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 CXCR6O00574 342 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 HNRNPRO43390 633 aaKnown RBP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 VPS4BO75351 444 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 H6PDO95479 791 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 PCCBP05166 539 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 SLC5A2P31639 672 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 BMPR1AP36894 532 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 SLC19A1P41440 591 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 STT3AP46977 705 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 PSMD8P48556 350 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 CSNK1DP48730 415 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 RPS13P62277 151 aaKnown RBP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 ARHGAP15Q53QZ3 475 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 LCN8Q6JVE9 175 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 DOK4Q8TEW6 326 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 CIDECQ96AQ7 238 aaPredicted RBP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 OSBPL6Q9BZF3 934 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 TRIM39Q9HCM9 518 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 FZD3Q9NPG1 666 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 GULP1Q9UBP9 304 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 KLHL20Q9Y2M5 609 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 CNTRLQ7Z7A1 2325 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 M0R129 80 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 EPHX1P07099 455 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 ANXA6P08133 673 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 GPR1P46091 355 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 ST8SIA6P61647 398 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 RPS26P62854 115 aaKnown RBP11.57□□□□□ -0.56
PTPRN-204ENST00000423636 KIAA0040Q15053 153 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 GPR33Q49SQ1 333 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 LDLRAP1Q5SW96 308 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 FRG2Q64ET8 278 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 NOXRED1Q6NXP6 359 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 LIPIQ6XZB0 460 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 CARM1Q86X55 608 aa11.57□□□□□ -0.56
PTPRN-204ENST00000423636 DHRSXQ8N5I4 330 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms