RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 RPA3P35244 121 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-202ENST00000422991 GGT5P36269 586 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 SLC6A12P48065 614 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 ZFP36L1Q07352 338 aaKnown RBP16.4■□□□□ 0.22
COL7A1-202ENST00000422991 TSTA3Q13630 321 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-202ENST00000422991 SLC5A12Q1EHB4 618 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 C18orf21Q32NC0 220 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-202ENST00000422991 B3GNT8Q7Z7M8 397 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 EXOC3L1Q86VI1 746 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 KLHDC8AQ8IYD2 350 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 OR2A1Q8NGT9 310 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 ALKBH8Q96BT7 664 aaKnown RBP16.4■□□□□ 0.22
COL7A1-202ENST00000422991 TLCD1Q96CP7 247 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 MED8Q96G25 268 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 CCDC74BQ96LY2 380 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 PPM1MQ96MI6 270 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 SH3GL2Q99962 352 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 PITPNM3Q9BZ71 974 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 SSU72Q9NP77 194 aaKnown RBP16.4■□□□□ 0.22
COL7A1-202ENST00000422991 WWOXQ9NZC7 414 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 KLHL3Q9UH77 587 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 PTBP2Q9UKA9 531 aaKnown RBP16.4■□□□□ 0.22
COL7A1-202ENST00000422991 GRID1Q9ULK0 1009 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 TMCO1Q9UM00 188 aa16.4■□□□□ 0.22
COL7A1-202ENST00000422991 TYROBPO43914 113 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 PLIN3O60664 434 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 SPAG7O75391 227 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 IPO13O94829 963 aaKnown RBP16.39■□□□□ 0.21
COL7A1-202ENST00000422991 FKBP9O95302 570 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 ANKRD34CP0C6C1 535 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 GFAPP14136 432 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 CCND1P24385 295 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 CCKBRP32239 447 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 LSSP48449 732 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 ALDH18A1P54886 795 aaKnown RBP16.39■□□□□ 0.21
COL7A1-202ENST00000422991 INHBCP55103 352 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 PTCHD3Q3KNS1 767 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 CCDC153Q494R4 210 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 SNAP47Q5SQN1 464 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 AGBL2Q5U5Z8 902 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 PRAMEF13Q5VWM6 474 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 CAPN13Q6MZZ7 669 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-202ENST00000422991 RAB44Q7Z6P3 723 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-202ENST00000422991 TRIM73Q86UV7 250 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 CARFQ8N187 725 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 FBXO39Q8N4B4 442 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 DCBLD1Q8N8Z6 715 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 PYCR2Q96C36 320 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 TMEM74Q96NL1 305 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 DEPDC7Q96QD5 511 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 MAP3K3Q99759 626 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 PCBD2Q9H0N5 130 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 C12orf65Q9H3J6 166 aaKnown RBP16.39■□□□□ 0.21
COL7A1-202ENST00000422991 CNOT10Q9H9A5 744 aaKnown RBP16.39■□□□□ 0.21
COL7A1-202ENST00000422991 SEMA5BQ9P283 1151 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 TAC3Q9UHF0 121 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 CLCA2Q9UQC9 943 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 PLLPQ9Y342 182 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 PCDHB11Q9Y5F2 797 aa16.39■□□□□ 0.21
COL7A1-202ENST00000422991 ACACBO00763 2458 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 A0A0J9YY10 115 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 TOX3O15405 576 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-202ENST00000422991 SMIM24O75264 130 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 CSO75390 466 aaKnown RBP16.38■□□□□ 0.21
COL7A1-202ENST00000422991 RASSF9O75901 435 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 CDH3P22223 829 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 AGTR2P50052 363 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 FOXC1Q12948 553 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 TRA2AQ13595 282 aaKnown RBP eCLIP16.38■□□□□ 0.21
COL7A1-202ENST00000422991 SETDB1Q15047 1291 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 PFKFB4Q16877 469 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 ISXQ2M1V0 245 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 PHF19Q5T6S3 580 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 THEMIS2Q5TEJ8 643 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 CACHD1Q5VU97 1274 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 LCTLQ6UWM7 567 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 ARHGAP22Q7Z5H3 698 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 TMPRSS12Q86WS5 348 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 FAM20CQ8IXL6 584 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 CACTIN-AS1Q8N1I8 211 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 PTGR2Q8N8N7 351 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-202ENST00000422991 OR2L3Q8NG85 312 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 ARL8AQ96BM9 186 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 MIPEPQ99797 713 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 ACAT2Q9BWD1 397 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 IQCGQ9H095 443 aaKnown RBP16.38■□□□□ 0.21
COL7A1-202ENST00000422991 C1GALT1Q9NS00 363 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 ABCF3Q9NUQ8 709 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 INTS7Q9NVH2 962 aaKnown RBP16.38■□□□□ 0.21
COL7A1-202ENST00000422991 ASB1Q9Y576 335 aa16.38■□□□□ 0.21
COL7A1-202ENST00000422991 CHD8Q9HCK8 2581 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 TPRP12270 2363 aaKnown RBP16.37■□□□□ 0.21
COL7A1-202ENST00000422991 IGHV5-51A0A0C4DH38 117 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 A8MT66 165 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 WDR47O94967 919 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 CCNDBP1O95273 360 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 PVRP15151 417 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 ST6GAL1P15907 406 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 TAC1P20366 129 aa16.37■□□□□ 0.21
COL7A1-202ENST00000422991 HSPA7P48741 367 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms