RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 MLNP12872 115 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 ITGALP20701 1170 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 ITGA3P26006 1051 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 ACRV1P26436 265 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 ITGA8P53708 1063 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 DCDP81605 110 aaKnown RBP12.4□□□□□ -0.42
LINC00339-202ENST00000416769 ANKRD22Q5VYY1 191 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 COX15Q7KZN9 410 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 TAX1BP1Q86VP1 789 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 KCNMB4Q86W47 210 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 HPS6Q86YV9 775 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 IFT20Q8IY31 132 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 GPR135Q8IZ08 494 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 DNAJC22Q8N4W6 341 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 GRHL3Q8TE85 626 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 CNDP1Q96KN2 507 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 RHOXF2Q9BQY4 288 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 DHRS4Q9BTZ2 278 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 FAM129AQ9BZQ8 928 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 MVB12BQ9H7P6 319 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 SYTL2Q9HCH5 934 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 ZDHHC3Q9NYG2 299 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 GRHL1Q9NZI5 618 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 GPN3Q9UHW5 284 aaPredicted RBP12.4□□□□□ -0.42
LINC00339-202ENST00000416769 SRPK3Q9UPE1 567 aa12.4□□□□□ -0.42
LINC00339-202ENST00000416769 TDRKHQ9Y2W6 561 aaKnown RBP12.4□□□□□ -0.42
LINC00339-202ENST00000416769 CSMD2Q7Z408 3487 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 TRBV5-4A0A0C4DH59 114 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 C17orf113A0A1B0GUU1 675 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 KRT87PA6NCN2 255 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 PEX12O00623 359 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 SOCS6O14544 535 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 TP73O15350 636 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 MED26O95402 600 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 MAGP20916 626 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 ACADLP28330 430 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 GRNP28799 593 aaKnown RBP12.39□□□□□ -0.43
LINC00339-202ENST00000416769 HADHAP40939 763 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 GCGRP47871 477 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 NPY2RP49146 381 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 TERF1P54274 439 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 CSE1LP55060 971 aaKnown RBP12.39□□□□□ -0.43
LINC00339-202ENST00000416769 Q0VFX4 171 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 CDH17Q12864 832 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 CBLBQ13191 982 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 PPP1R21Q6ZMI0 780 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 TAS2R42Q7RTR8 314 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 PARP9Q8IXQ6 854 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 ZADH2Q8N4Q0 377 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 CATSPER1Q8NEC5 780 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 LKAAEAR1Q8TD35 194 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 N4BP2L2Q92802 583 aaPredicted RBP12.39□□□□□ -0.43
LINC00339-202ENST00000416769 MARVELD3Q96A59 401 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 ULK4Q96C45 1275 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 FER1L6-AS2Q96M78 137 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 IL17FQ96PD4 163 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 WDR77Q9BQA1 342 aaPredicted RBP12.39□□□□□ -0.43
LINC00339-202ENST00000416769 DPH2Q9BQC3 489 aaPredicted RBP12.39□□□□□ -0.43
LINC00339-202ENST00000416769 SOX17Q9H6I2 414 aaPredicted RBP12.39□□□□□ -0.43
LINC00339-202ENST00000416769 IRAK4Q9NWZ3 460 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 CTSFQ9UBX1 484 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 NDOR1Q9UHB4 597 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 ASF1AQ9Y294 204 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 HS3ST3B1Q9Y662 390 aa12.39□□□□□ -0.43
LINC00339-202ENST00000416769 A0A0J9YY10 115 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 AGPSO00116 658 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 ALPPP05187 535 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 RALBP11234 206 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 GRIA1P42261 906 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 GRIA3P42263 894 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 CD151P48509 253 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 ELOAQ14241 798 aaKnown RBP12.38□□□□□ -0.43
LINC00339-202ENST00000416769 TRADDQ15628 312 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 CYP2A13Q16696 494 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 KIRREL2Q6UWL6 708 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 CAND1Q86VP6 1230 aaKnown RBP12.38□□□□□ -0.43
LINC00339-202ENST00000416769 VRK3Q8IV63 474 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 EIF1ADQ8N9N8 165 aaKnown RBP12.38□□□□□ -0.43
LINC00339-202ENST00000416769 DNAAF3Q8N9W5 541 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 LINC01555Q8NAE3 123 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 ST6GALNAC3Q8NDV1 305 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 OR52K1Q8NGK4 314 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 PROKR1Q8TCW9 393 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 PTERQ96BW5 349 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 SPSB2Q99619 263 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 XAB2Q9HCS7 855 aaKnown RBP12.38□□□□□ -0.43
LINC00339-202ENST00000416769 BFARQ9NZS9 450 aa12.38□□□□□ -0.43
LINC00339-202ENST00000416769 STOX2Q9P2F5 926 aaPredicted RBP12.38□□□□□ -0.43
LINC00339-202ENST00000416769 PDZD2O15018 2839 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 ESYT3A0FGR9 886 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 KLHL33A6NCF5 533 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 ISM1B1AKI9 464 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 CFAP99D6REC4 459 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 OR1I1O60431 355 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 KLHL18O94889 574 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 CRTAMO95727 393 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 HBQ1P09105 142 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 ALAS2P22557 587 aa12.37□□□□□ -0.43
LINC00339-202ENST00000416769 VARSP26640 1264 aaKnown RBP12.37□□□□□ -0.43
LINC00339-202ENST00000416769 OR1D4P47884 311 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms