RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ANKRD46Q86W74 232 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 TMEM203Q969S6 136 aa13.06□□□□□ -0.32
CCDC88A-204ENST00000413716 EME2A4GXA9 379 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TTLL8A6PVC2 850 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 FSTL1Q12841 308 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 PON2Q15165 354 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 BEST3Q8N1M1 668 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 OR5K1Q8NHB7 308 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 OSTF1Q92882 214 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 MOAP1Q96BY2 351 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 PGAP3Q96FM1 320 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 BTBD2Q9BX70 525 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 OVOS2A0A0G2JMS6 1433 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 DLGAP1O14490 977 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 IL33O95760 270 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 PAK4O96013 591 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 IL3P08700 152 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 HTR2BP41595 481 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 NCCRP1Q6ZVX7 275 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 UBQLNLQ8IYU4 475 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 OR10A6Q8NH74 314 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 GEMIN6Q8WXD5 167 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 SLC25A36Q96CQ1 311 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TWNKQ96RR1 684 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 EBPLQ9BY08 206 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TMEM39BQ9GZU3 492 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 MRPL17Q9NRX2 175 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 BHLHE40O14503 412 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 RGS9O75916 674 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 SNCGO76070 127 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 AGR2O95994 175 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 GANABQ14697 944 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 GLYATL2Q8WU03 294 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNRF3Q9ULT6 936 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 NLRP1Q9C000 1473 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 PRAMEF22A3QJZ6 481 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 NPIPA7E9PJI5 369 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 PQBP1O60828 265 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 ZBTB7AO95365 584 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 MT-ND1P03886 318 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 NPIPA8P0DM63 369 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 MYO19Q96H55 970 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 CYP8B1Q9UNU6 501 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 VWA7Q9Y334 891 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3DA0A087WVF3 549 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3IA0A087WXS9 549 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3EA0A087X179 549 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3KA0A087X1G2 549 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3FA6NER0 549 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3LB9A6J9 549 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 VIPP01282 170 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3HP0C7X1 549 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 CHATP28329 748 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 HLFQ16534 295 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 SBK1Q52WX2 424 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 LRIF1Q5T3J3 769 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3GQ6DHY5 549 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3CQ6IPX1 549 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TBC1D3Q8IZP1 549 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 ASPNQ9BXN1 380 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 NANSQ9NR45 359 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF701Q9NV72 531 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 ACAD8Q9UKU7 415 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 TIMM13Q9Y5L4 95 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 CTPS1P17812 591 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 RPL10P27635 214 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 BNIP3Q12983 259 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 ECH1Q13011 328 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 GRIK4Q16099 956 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 C14orf28Q4W4Y0 310 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 SLC27A1Q6PCB7 646 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 FBXO15Q8NCQ5 510 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 RBM15BQ8NDT2 890 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 MTMR8Q96EF0 704 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 SEMA6BQ9H3T3 888 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 LDAHQ9H6V9 325 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 PNPOQ9NVS9 261 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 HIF1ANQ9NWT6 349 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 NRCAMQ92823 1304 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 EFCAB6Q5THR3 1501 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 LOXHD1Q8IVV2 1947 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 C2orf72A6NCS6 295 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 A8MUI8 341 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 CALCAP01258 141 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 ZNF136P52737 540 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 PER3P56645 1201 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 RPP30P78346 268 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 ZBED5Q49AG3 693 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 FAM198BQ6UWH4 519 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 NPNTQ6UXI9 565 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 UNC93B1Q9H1C4 597 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 SEC61A2Q9H9S3 476 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 COPZ2Q9P299 210 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 KCNU1A8MYU2 1149 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 CRISP3P54108 245 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 SCARF1Q14162 830 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 COMMD7Q86VX2 200 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 GALNT13Q8IUC8 556 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 NRSN1Q8IZ57 195 aa13.05□□□□□ -0.32
CCDC88A-204ENST00000413716 GLB1L3Q8NCI6 653 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms