RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 MIGA1Q8NAN2 632 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 ESAMQ96AP7 390 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 LINGO1Q96FE5 620 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 C16orf58Q96GQ5 468 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 FAM81BQ96LP2 452 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 QRFPRQ96P65 431 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 ZPBPQ9BS86 351 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 ATG101Q9BSB4 218 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 NPFFR1Q9GZQ6 430 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 TMEM117Q9H0C3 514 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 KCNN2Q9H2S1 579 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 SNX25Q9H3E2 840 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 CUEDC2Q9H467 287 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 RMND5AQ9H871 391 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 MAGEF1Q9HAY2 307 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 SEBOXQ9HB31 216 aaPredicted RBP4.32□□□□□ -1.72
BRCA1-204ENST00000412061 DNAJC4Q9NNZ3 241 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 DDX18Q9NVP1 670 aaKnown RBP4.32□□□□□ -1.72
BRCA1-204ENST00000412061 C11orf21Q9P2W6 132 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 ACSL5Q9ULC5 683 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 TTC7AQ9ULT0 858 aaPredicted RBP4.32□□□□□ -1.72
BRCA1-204ENST00000412061 ABT1Q9ULW3 272 aaKnown RBP4.32□□□□□ -1.72
BRCA1-204ENST00000412061 PLA2G4CQ9UP65 541 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 CAB39Q9Y376 341 aaPredicted RBP4.32□□□□□ -1.72
BRCA1-204ENST00000412061 NAALAD2Q9Y3Q0 740 aa4.32□□□□□ -1.72
BRCA1-204ENST00000412061 TMEM184BQ9Y519 407 aaPredicted RBP4.32□□□□□ -1.72
BRCA1-204ENST00000412061 ZNF804BA4D1E1 1349 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 CLSPNQ9HAW4 1339 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 KIAA1217Q5T5P2 1943 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 CKAP5Q14008 2032 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 A0A0B4J203 849 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 TRIM49BA6NDI0 452 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 IDH1O75874 414 aaKnown RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 NDUFB4O95168 129 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 NDUFB8O95169 186 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 CSN3P07498 182 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 CYP2A7P20853 494 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 HSD17B3P37058 310 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 TAGLN2P37802 199 aaKnown RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 SLC6A12P48065 614 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 SLC9A3P48764 834 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 RASSF2P50749 326 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 GSDMDP57764 484 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 COG7P83436 770 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 PRKCZQ05513 592 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 SRSF1Q07955 248 aaKnown RBP eCLIP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 ARHGAP1Q07960 439 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 KIF5AQ12840 1032 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 MAD2L1Q13257 205 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 RBMS2Q15434 407 aaKnown RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 DUSP6Q16828 381 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 CTU2Q2VPK5 515 aaKnown RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 USH1GQ495M9 461 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 NADK2Q4G0N4 442 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 KCTD21Q4G0X4 260 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 LACTB2Q53H82 288 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 CFAP157Q5JU67 520 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 STXBP5Q5T5C0 1151 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 ZNF626Q68DY1 528 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 WBP2NLQ6ICG8 309 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 FIP1L1Q6UN15 594 aaKnown RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 PRSS55Q6UWB4 352 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 PARM1Q6UWI2 310 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 ARSKQ6UWY0 536 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 SLC16A12Q6ZSM3 486 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 ZNF534Q76KX8 674 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 RUFY3Q7L099 469 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 PATL1Q86TB9 770 aaKnown RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 ASPGQ86U10 573 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 VASH2Q86V25 355 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 PALB2Q86YC2 1186 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 TMEM126BQ8IUX1 230 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 SFTPA2Q8IWL1 248 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 MB21D2Q8IYB1 491 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 APCDD1Q8J025 514 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 ARFGAP1Q8N6T3 406 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 EMC1Q8N766 993 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 RASGEF1AQ8N9B8 481 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 PAPD5Q8NDF8 572 aaKnown RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 ENGASEQ8NFI3 743 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 TMEM163Q8TC26 289 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 CKAP2Q8WWK9 683 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 SYN2Q92777 582 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 GRAMD2BQ96HH9 432 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 GFM1Q96RP9 751 aaKnown RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 ZSCAN5AQ9BUG6 496 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 EDEM2Q9BV94 578 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 DPAGT1Q9H3H5 408 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 WDR26Q9H7D7 661 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 CDH20Q9HBT6 801 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 SMPD3Q9NY59 655 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-204ENST00000412061 RAI14Q9P0K7 980 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 RHCGQ9UBD6 479 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 HS3ST3B1Q9Y662 390 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 SQORQ9Y6N5 450 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 HEG1Q9ULI3 1381 aa4.31□□□□□ -1.72
BRCA1-204ENST00000412061 NCAPD2Q15021 1401 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 TMEM272A0A1B0GTI8 110 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 ILVBLA1L0T0 632 aa4.3□□□□□ -1.72
BRCA1-204ENST00000412061 FAM149AA5PLN7 773 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms