RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PTPRRQ15256 657 aa18.06■□□□□ 0.48
USP48-204ENST00000400301 NPTX1Q15818 432 aa18.06■□□□□ 0.48
USP48-204ENST00000400301 TJAP1Q5JTD0 557 aa18.06■□□□□ 0.48
USP48-204ENST00000400301 AGTRAPQ6RW13 159 aa18.06■□□□□ 0.48
USP48-204ENST00000400301 COX4I2Q96KJ9 171 aa18.06■□□□□ 0.48
USP48-204ENST00000400301 IL26Q9NPH9 171 aa18.06■□□□□ 0.48
USP48-204ENST00000400301 LTBP1Q14766 1721 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 TGFB1P01137 390 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 SBK3P0C264 359 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 DNAJA1P31689 397 aaKnown RBP18.05■□□□□ 0.48
USP48-204ENST00000400301 CLCN2P51788 898 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 ELP6Q0PNE2 266 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 CBX2Q14781 532 aaPredicted RBP18.05■□□□□ 0.48
USP48-204ENST00000400301 RAB39AQ14964 217 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 DTWD1Q8N5C7 304 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 VANGL1Q8TAA9 524 aaPredicted RBP18.05■□□□□ 0.48
USP48-204ENST00000400301 SGIP1Q9BQI5 828 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 TPT1P8Q9HAU6 139 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 ERGIC3Q9Y282 383 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 H0YAE9 185 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 LEFTY2O00292 366 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 SLC28A2O43868 658 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 ITGBL1O95965 494 aaPredicted RBP18.05■□□□□ 0.48
USP48-204ENST00000400301 DGKGP49619 791 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 TXNL4AP83876 142 aaKnown RBP18.05■□□□□ 0.48
USP48-204ENST00000400301 PCBP2Q15366 365 aaKnown RBP eCLIP18.05■□□□□ 0.48
USP48-204ENST00000400301 PELI3Q8N2H9 469 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 TMEM102Q8N9M5 508 aaPredicted RBP18.05■□□□□ 0.48
USP48-204ENST00000400301 SELENONQ9NZV5 590 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 SLCO3A1Q9UIG8 710 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 PSME2Q9UL46 239 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 MYO9BQ13459 2157 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 SMAD6O43541 496 aaKnown RBP18.05■□□□□ 0.48
USP48-204ENST00000400301 ABCB7O75027 752 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 ATP13A5Q4VNC0 1218 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 IFI44LQ53G44 452 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 ANKRD26P1Q6NSI1 321 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 REM2Q8IYK8 340 aaPredicted RBP18.05■□□□□ 0.48
USP48-204ENST00000400301 NACC2Q96BF6 587 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 AIF1LQ9BQI0 150 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 FAIM2Q9BWQ8 316 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 ZNF282Q9UDV7 671 aaPredicted RBP18.05■□□□□ 0.48
USP48-204ENST00000400301 CDC14AQ9UNH5 594 aa18.05■□□□□ 0.48
USP48-204ENST00000400301 J3QRK9 145 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 TLL1O43897 1013 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 ZNF182P17025 639 aaPredicted RBP18.04■□□□□ 0.48
USP48-204ENST00000400301 ATF6P18850 670 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 MYF6P23409 242 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 SSR2P43308 183 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 PREPP48147 710 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 RPS7P62081 194 aaKnown RBP18.04■□□□□ 0.48
USP48-204ENST00000400301 SLBPQ14493 270 aaKnown RBP eCLIP18.04■□□□□ 0.483e-8■■■■■ 73
USP48-204ENST00000400301 FUNDC1Q8IVP5 155 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 GTPBP3Q969Y2 492 aaKnown RBP18.04■□□□□ 0.48
USP48-204ENST00000400301 COL26A1Q96A83 441 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 FBXL8Q96CD0 374 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 KCNH6Q9H252 994 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 SLAMF8Q9P0V8 285 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 WNT9AO14904 365 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 GNAO1P09471 354 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 BDKRB1P46663 353 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 UGT2B15P54855 530 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 NOXRED1Q6NXP6 359 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 CNKSR3Q6P9H4 555 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 XAGE5Q8WWM1 108 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 TRIP11Q15643 1979 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 UPK3BL1B0FP48 263 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 UPK3BL2E5RIL1 263 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 SERPINB7O75635 380 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 FGF19O95750 216 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 IFNW1P05000 195 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 APLP1P51693 650 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 BEND7Q8N7W2 519 aaPredicted RBP18.04■□□□□ 0.48
USP48-204ENST00000400301 SMAD5Q99717 465 aaKnown RBP18.04■□□□□ 0.48
USP48-204ENST00000400301 COPS4Q9BT78 406 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 FARSBQ9NSD9 589 aaKnown RBP18.04■□□□□ 0.48
USP48-204ENST00000400301 IMP3Q9NV31 184 aaKnown RBP18.04■□□□□ 0.48
USP48-204ENST00000400301 POLR2AP24928 1970 aaKnown RBP18.04■□□□□ 0.48
USP48-204ENST00000400301 GUCY1B2O75343 617 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 VIPR1P32241 457 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 GTDC1Q4AE62 458 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 ENPP6Q6UWR7 440 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 LIMS2Q7Z4I7 341 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 CYP4Z2PQ8N1L4 340 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 EXOSC8Q96B26 276 aaKnown RBP18.04■□□□□ 0.48
USP48-204ENST00000400301 ZNF607Q96SK3 696 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 ZSCAN5AQ9BUG6 496 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 EHD3Q9NZN3 535 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 PCDHGB3Q9Y5G1 929 aa18.04■□□□□ 0.48
USP48-204ENST00000400301 IGLV3-10A0A075B6K4 115 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 HNRNPCL2B2RXH8 293 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 CACNG3O60359 315 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 PDE9AO76083 593 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 CCR3P51677 355 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 MAPK12P53778 367 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 ATG9BQ674R7 924 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 NEK5Q6P3R8 708 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 CHPFQ8IZ52 775 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 ADGRG2Q8IZP9 1017 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 TFAP2CQ92754 450 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms