RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RHPN2P1A8MT19 583 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 E2F3O00716 465 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 GDF9O60383 454 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 EDF1O60869 148 aaKnown RBP13.76□□□□□ -0.21
SKA1-202ENST00000398452 LYPLA1O75608 230 aaPredicted RBP13.76□□□□□ -0.21
SKA1-202ENST00000398452 EML2O95834 649 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 HMOX2P30519 316 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 PKLRP30613 574 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 GDF5P43026 501 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 SLC6A12P48065 614 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 RPL14P50914 215 aaKnown RBP13.76□□□□□ -0.21
SKA1-202ENST00000398452 SEC24CP53992 1094 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 CYP2A13Q16696 494 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 C18orf21Q32NC0 220 aaPredicted RBP13.76□□□□□ -0.21
SKA1-202ENST00000398452 SH2D4BQ5SQS7 431 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 PRAMEF13Q5VWM6 474 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 GPRIN3Q6ZVF9 776 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 MILR1Q7Z6M3 343 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 AMIGO1Q86WK6 493 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 NAGSQ8N159 534 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 ARL10Q8N8L6 244 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 PPFIBP2Q8ND30 876 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 OR2L8Q8NGY9 312 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 OR56A3Q8NH54 315 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 PIWIL2Q8TC59 973 aaKnown RBP13.76□□□□□ -0.21
SKA1-202ENST00000398452 PYCR2Q96C36 320 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 IL17FQ96PD4 163 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 SIKE1Q9BRV8 207 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 SHCBP1LQ9BZQ2 653 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 ZMYND15Q9H091 742 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 SMOC1Q9H4F8 434 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 SLCO1B3Q9NPD5 702 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 PSD3Q9NYI0 1048 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 GPRC5BQ9NZH0 403 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 OR6C2Q9NZP2 312 aa13.76□□□□□ -0.21
SKA1-202ENST00000398452 CNOT1A5YKK6 2376 aaKnown RBP13.76□□□□□ -0.21
SKA1-202ENST00000398452 FAM221BA6H8Z2 402 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 LRRC14BA6NHZ5 514 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 PATE3B3GLJ2 98 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 E7ENX8 843 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 ITM2AO43736 263 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 TGDSO95455 350 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 KITP10721 976 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 TSPAN8P19075 237 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 GNAZP19086 355 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 SDHBP21912 280 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 OCRLQ01968 901 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 IRF8Q02556 426 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 TAP2Q03519 686 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 BNIP3Q12983 259 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 SF3A2Q15428 464 aaKnown RBP13.75□□□□□ -0.21
SKA1-202ENST00000398452 HIST2H2ACQ16777 129 aaPredicted RBP13.75□□□□□ -0.21
SKA1-202ENST00000398452 C14orf28Q4W4Y0 310 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 C6orf132Q5T0Z8 1188 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 HIST2H2AA3Q6FI13 130 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 LCTLQ6UWM7 567 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 PRR23CQ6ZRP0 262 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 TMEM26Q6ZUK4 368 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 LAPTM4BQ86VI4 370 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 OOSP2Q86WS3 158 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 CLYBLQ8N0X4 340 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 ARL14Q8N4G2 192 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 OR4E2Q8NGC2 313 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 OR6Y1Q8NGX8 325 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 AGR3Q8TD06 166 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 PATE1Q8WXA2 126 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 ZNF317Q96PQ6 595 aaPredicted RBP13.75□□□□□ -0.21
SKA1-202ENST00000398452 ZNF382Q96SR6 550 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 XKR8Q9H6D3 395 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 SLC40A1Q9NP59 571 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 ACSS2Q9NR19 701 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 UCKL1Q9NWZ5 548 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 NLGN3Q9NZ94 848 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 VTI1BQ9UEU0 232 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 FIS1Q9Y3D6 152 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 PCDHB11Q9Y5F2 797 aa13.75□□□□□ -0.21
SKA1-202ENST00000398452 KRT87PA6NCN2 255 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 ISM1B1AKI9 464 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 NDUFAB1O14561 156 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 CLDN9O95484 217 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 ESRRBO95718 433 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 ENO1P06733 434 aaKnown RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 CHRNGP07510 517 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 EBLN1P0CF75 366 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 HGFP14210 728 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 AMD1P17707 334 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 CMPK1P30085 196 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 MAZP56270 477 aaKnown RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 UBE2IP63279 158 aaKnown RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 BNC1Q01954 994 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 GPR18Q14330 331 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 GRB7Q14451 532 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 NAA25Q14CX7 972 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 PROX2Q3B8N5 592 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 AASDHQ4L235 1098 aaPredicted RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 XKR6Q5GH73 641 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 PAGE2BQ5JRK9 111 aa13.74□□□□□ -0.21
SKA1-202ENST00000398452 GKAP1Q5VSY0 366 aaPredicted RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 ZCCHC8Q6NZY4 707 aaKnown RBP13.74□□□□□ -0.21
SKA1-202ENST00000398452 SUSD1Q6UWL2 747 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms