RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TARDBPQ13148 414 aaKnown RBP eCLIP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 DSC3Q14574 896 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 GPR33Q49SQ1 333 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 EIPR1Q53HC9 387 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3GQ6DHY5 549 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3CQ6IPX1 549 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 LRRC70Q7Z2Q7 622 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D3Q8IZP1 549 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC22A17Q8WUG5 538 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 SEC14L1Q92503 715 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 LPIN3Q9BQK8 851 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 ZNF471Q9BX82 626 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 RRAGCQ9HB90 399 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CLDN4O14493 209 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TREHO43280 583 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 OR1F1O43749 312 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 HMGN1P05114 100 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 PEPDP12955 493 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 IL1R2P27930 398 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CHRNA4P43681 627 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 HCAR3P49019 387 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 GSK3BP49841 420 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CRISP3P54108 245 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 FAM110CQ1W6H9 321 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 SH3PXD2AQ5TCZ1 1133 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 TMBIM1Q969X1 311 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 KCTD7Q96MP8 289 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 ZNF599Q96NL3 588 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 QPCTLQ9NXS2 382 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 PCDH10Q9P2E7 1040 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 MAB21L2Q9Y586 359 aa10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 SPIN1Q9Y657 262 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-203ENST00000396595 CLCA1A8K7I4 914 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 IRAK2O43187 625 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 VIPP01282 170 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 SRPRAP08240 638 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 LHCGRP22888 699 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 VARSP26640 1264 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 CSTF2P33240 577 aaKnown RBP eCLIP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 SPATS1Q496A3 300 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ATAD3CQ5T2N8 411 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 C6orf89Q6UWU4 347 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 QSOX2Q6ZRP7 698 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 SSX6Q7RTT6 188 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ERMP1Q7Z2K6 904 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC51AQ86UW1 340 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 PDSS2Q86YH6 399 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 NATD1Q8N6N6 113 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 PKP2Q99959 881 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 HEPHQ9BQS7 1158 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 FNIP2Q9P278 1114 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 TEX264Q9Y6I9 313 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ANXA2P2A6NMY6 339 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ANXA2P07355 339 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 IL32P24001 234 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 RBM34P42696 430 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 MAN2A2P49641 1150 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 FKBP1BP68106 108 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 IDNKQ5T6J7 187 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 NCBP2-AS2Q69YL0 99 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 OR2T5Q6IEZ7 315 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC30A6Q6NXT4 461 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 PAQR3Q6TCH7 311 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 PAMR1Q6UXH9 720 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 TIFABQ6ZNK6 161 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 GALNT13Q8IUC8 556 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 LGI4Q8N135 537 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 INO80EQ8NBZ0 244 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 OR2T29Q8NH02 315 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 FUBP3Q96I24 572 aaKnown RBP eCLIP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ZFP3Q96NJ6 502 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 TCF7L1Q9HCS4 588 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 FBXL21Q9UKT6 434 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 DAPL1A0PJW8 107 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 MATN4O95460 622 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 LMO2P25791 158 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ACSL1P33121 698 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 MLLT6P55198 1093 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 GPX6P59796 221 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ADAM8P78325 824 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 SYT16Q17RD7 645 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 CDKL4Q5MAI5 379 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 EPGNQ6UW88 154 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 OR8K3Q8NH51 312 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 OR51V1Q9H2C8 321 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ANKHQ9HCJ1 492 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 HIF3AQ9Y2N7 669 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 FCF1Q9Y324 198 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 PCDHGB7Q9Y5F8 929 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 H3BSA7 217 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 PCDH7O60245 1069 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 DLX3O60479 287 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 BCAS2O75934 225 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ARCN1P48444 511 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 CDH15P55291 814 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 NFKB2Q00653 900 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 MAB21L1Q13394 359 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 SCARB2Q14108 478 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 BTBD16Q32M84 506 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 UBAP2Q5T6F2 1119 aaKnown RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms