RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 KIAA1614Q5VZ46 1190 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 SUSD1Q6UWL2 747 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 TIPARPQ7Z3E1 657 aaKnown RBP20.9■□□□□ 0.94
CLN3-207ENST00000395653 CACNA2D3Q8IZS8 1091 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 EIF1ADQ8N9N8 165 aaKnown RBP20.9■□□□□ 0.94
CLN3-207ENST00000395653 ZUFSPQ96AP4 578 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 TRIM54Q9BYV2 358 aa20.9■□□□□ 0.94
CLN3-207ENST00000395653 STOX2Q9P2F5 926 aaPredicted RBP20.9■□□□□ 0.94
CLN3-207ENST00000395653 NOVA2Q9UNW9 492 aaKnown RBP20.9■□□□□ 0.94
CLN3-207ENST00000395653 PABPN1LA6NDY0 278 aaKnown RBP20.89■□□□□ 0.94
CLN3-207ENST00000395653 TARM1B6A8C7 271 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 TMEM150CB9EJG8 249 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 SCRG1O75711 98 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 RPA3P35244 121 aaPredicted RBP20.89■□□□□ 0.94
CLN3-207ENST00000395653 GRIA3P42263 894 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 RAB10P61026 200 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 FIGLAQ6QHK4 219 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 SBSNQ6UWP8 590 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 DNAJC22Q8N4W6 341 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 ESX1Q8N693 406 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 PPFIBP2Q8ND30 876 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 OR1L3Q8NH93 324 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 ANKRD49Q8WVL7 239 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 CCNL2Q96S94 520 aaPredicted RBP20.89■□□□□ 0.94
CLN3-207ENST00000395653 MIPEPQ99797 713 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 SERTAD3Q9UJW9 196 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 KLHL20Q9Y2M5 609 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 PCDHB3Q9Y5E6 796 aa20.89■□□□□ 0.94
CLN3-207ENST00000395653 PHGDHO43175 533 aaKnown RBP20.88■□□□□ 0.93
CLN3-207ENST00000395653 SNRNP200O75643 2136 aaKnown RBP20.88■□□□□ 0.93
CLN3-207ENST00000395653 MT-ND3P03897 115 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 CMPK1P30085 196 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 ITGA1P56199 1179 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 TMPRSS3P57727 454 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 FCRL6Q6DN72 434 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 C6orf15Q6UXA7 325 aaPredicted RBP20.88■□□□□ 0.93
CLN3-207ENST00000395653 TMEM126BQ8IUX1 230 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 IL22RA1Q8N6P7 574 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 N4BP2L2Q92802 583 aaPredicted RBP20.88■□□□□ 0.93
CLN3-207ENST00000395653 ACAT2Q9BWD1 397 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 DERL2Q9GZP9 239 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 TAC3Q9UHF0 121 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 IKZF3Q9UKT9 509 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 PLCL2Q9UPR0 1127 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 ITPR1Q14643 2758 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 CFAP47Q6ZTR5 3102 aa20.88■□□□□ 0.93
CLN3-207ENST00000395653 CPNE3O75131 537 aaKnown RBP20.87■□□□□ 0.93
CLN3-207ENST00000395653 CCNDBP1O95273 360 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 ABATP80404 500 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 PRDX1Q06830 199 aaKnown RBP20.87■□□□□ 0.93
CLN3-207ENST00000395653 ABHD18Q0P651 414 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 TSTA3Q13630 321 aaPredicted RBP20.87■□□□□ 0.93
CLN3-207ENST00000395653 PPP1R3AQ16821 1122 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 DEFB110Q30KQ9 67 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 MANEAQ5SRI9 462 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 AGTRAPQ6RW13 159 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 MBOAT1Q6ZNC8 495 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 TRMT10CQ7L0Y3 403 aaKnown RBP20.87■□□□□ 0.93
CLN3-207ENST00000395653 ADAMTSL2Q86TH1 951 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 CCDC177Q9NQR7 707 aaPredicted RBP20.87■□□□□ 0.93
CLN3-207ENST00000395653 WDR70Q9NW82 654 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 ARL15Q9NXU5 204 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 ANKMY1Q9P2S6 941 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 A0A087WUV0 522 aaPredicted RBP20.87■□□□□ 0.93
CLN3-207ENST00000395653 TEX51A0A1B0GUA7 166 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 HCRTR1O43613 425 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 ABHD2P08910 425 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 TBPL1P62380 186 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 COL28A1Q2UY09 1125 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 ZC3H12BQ5HYM0 836 aaKnown RBP20.87■□□□□ 0.93
CLN3-207ENST00000395653 ICE2Q659A1 982 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 C19orf48Q6RUI8 117 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 GPR135Q8IZ08 494 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 GALNT6Q8NCL4 622 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 MRRFQ96E11 262 aaKnown RBP20.87■□□□□ 0.93
CLN3-207ENST00000395653 PCBD2Q9H0N5 130 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 MRPS30Q9NP92 439 aaKnown RBP20.87■□□□□ 0.93
CLN3-207ENST00000395653 CTNNAL1Q9UBT7 734 aa20.87■□□□□ 0.93
CLN3-207ENST00000395653 CACNA1BQ00975 2339 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 OR2A25A4D2G3 310 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 NPEPPSL1A6NEC2 478 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 E7EQ34 232 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 H3BMH7 237 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 CDC7O00311 574 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 NTRK1P04629 796 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 FAM153BP0C7A2 387 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 CCDC166P0CW27 439 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 CCND1P24385 295 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 TNFRSF8P28908 595 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 CRABP2P29373 138 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 STAT5AP42229 794 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 UAP1Q16222 522 aaPredicted RBP20.86■□□□□ 0.93
CLN3-207ENST00000395653 FAM153CQ494X1 144 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 THEMIS2Q5TEJ8 643 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 VASH2Q86V25 355 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 SLC44A1Q8WWI5 657 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 ATL1Q8WXF7 558 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 FBXL8Q96CD0 374 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 LRFN5Q96NI6 719 aa20.86■□□□□ 0.93
CLN3-207ENST00000395653 DPH7Q9BTV6 452 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms