RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 UGT2B7P16662 529 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 TAC1P20366 129 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 PSMB5P28074 263 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 OAS2P29728 719 aaKnown RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 HSPA7P48741 367 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 AGTR2P50052 363 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 INSM1Q01101 510 aaPredicted RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 SETDB1Q15047 1291 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 SF1Q15637 639 aaKnown RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 CLPPQ16740 277 aaPredicted RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 CAPN13Q6MZZ7 669 aaPredicted RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 SPESP1Q6UW49 350 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 DHRS13Q6UX07 377 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 PTGR2Q8N8N7 351 aaPredicted RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 CD244Q9BZW8 370 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 CNOT10Q9H9A5 744 aaKnown RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 POMT2Q9UKY4 750 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 TMCO1Q9UM00 188 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 APOBEC2Q9Y235 224 aaKnown RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 SLC22A14Q9Y267 594 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 ASB1Q9Y576 335 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 PCDHB11Q9Y5F2 797 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 A8MT66 165 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 D6RAR5 112 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 IPO13O94829 963 aaKnown RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 C9P02748 559 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 CCND1P24385 295 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 ATP5F1P24539 256 aaPredicted RBP21.4■■□□□ 1.02
SDC3-202ENST00000339394 THEMIS2Q5TEJ8 643 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 FAM92BQ6ZTR7 304 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 FAM20CQ8IXL6 584 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 OR4D9Q8NGE8 314 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 RDH11Q8TC12 318 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 PPM1MQ96MI6 270 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 DPYSL5Q9BPU6 564 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 KLHL3Q9UH77 587 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 TAC3Q9UHF0 121 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 MN1Q10571 1320 aaPredicted RBP21.39■■□□□ 1.01
SDC3-202ENST00000339394 HMGB1P1B2RPK0 211 aaPredicted RBP21.39■■□□□ 1.01
SDC3-202ENST00000339394 KIF1CO43896 1103 aaKnown RBP21.39■■□□□ 1.01
SDC3-202ENST00000339394 STK16O75716 305 aa21.39■■□□□ 1.01
SDC3-202ENST00000339394 SIX3O95343 332 aaPredicted RBP21.39■■□□□ 1.01
SDC3-202ENST00000339394 MYL2P10916 166 aa21.39■■□□□ 1.01
SDC3-202ENST00000339394 CPA3P15088 417 aa21.39■■□□□ 1.01
SDC3-202ENST00000339394 ETV4P43268 484 aa21.39■■□□□ 1.01
SDC3-202ENST00000339394 YBX1P67809 324 aaKnown RBP21.39■■□□□ 1.01
SDC3-202ENST00000339394 ZYG11AQ6WRX3 759 aa21.39■■□□□ 1.01
SDC3-202ENST00000339394 THOC6Q86W42 341 aaKnown RBP21.39■■□□□ 1.01
SDC3-202ENST00000339394 UBTD2Q8WUN7 234 aa21.39■■□□□ 1.01
SDC3-202ENST00000339394 OR4K3Q96R72 315 aa21.39■■□□□ 1.01
SDC3-202ENST00000339394 PDP2Q9P2J9 529 aa21.39■■□□□ 1.01
SDC3-202ENST00000339394 COPG2Q9UBF2 871 aa21.39■■□□□ 1.01
SDC3-202ENST00000339394 TMEM120BA0PK00 339 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 STX16-NPEPL1H3BU86 382 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 STX16O14662 325 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 TM9SF1O15321 606 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 WDR47O94967 919 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 NPPBP16860 134 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 LSSP48449 732 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 NFKB2Q00653 900 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 PRDX1Q06830 199 aaKnown RBP21.38■■□□□ 1.01
SDC3-202ENST00000339394 PRAMEF13Q5VWM6 474 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 TRIM73Q86UV7 250 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 KLHDC8AQ8IYD2 350 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 OR2L3Q8NG85 312 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 CD180Q99467 661 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 MAP3K3Q99759 626 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 MIPEPQ99797 713 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 PCBD2Q9H0N5 130 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 SEMA6CQ9H3T2 930 aa21.38■■□□□ 1.01
SDC3-202ENST00000339394 TNPO3Q9Y5L0 923 aaKnown RBP21.38■■□□□ 1.01
SDC3-202ENST00000339394 IGHV5-10-1A0A0J9YXX1 117 aa21.37■■□□□ 1.01
SDC3-202ENST00000339394 LRRC14BA6NHZ5 514 aa21.37■■□□□ 1.01
SDC3-202ENST00000339394 CCNT2O60583 730 aaKnown RBP21.37■■□□□ 1.01
SDC3-202ENST00000339394 ZWINTO95229 277 aa21.37■■□□□ 1.01
SDC3-202ENST00000339394 CLDN6P56747 220 aa21.37■■□□□ 1.01
SDC3-202ENST00000339394 PCBP2Q15366 365 aaKnown RBP eCLIP21.37■■□□□ 1.01
SDC3-202ENST00000339394 SLC5A12Q1EHB4 618 aa21.37■■□□□ 1.01
SDC3-202ENST00000339394 SNAP47Q5SQN1 464 aa21.37■■□□□ 1.01
SDC3-202ENST00000339394 RBM44Q6ZP01 1051 aaKnown RBP21.37■■□□□ 1.01
SDC3-202ENST00000339394 PITPNM3Q9BZ71 974 aa21.37■■□□□ 1.01
SDC3-202ENST00000339394 MID2Q9UJV3 735 aa21.37■■□□□ 1.01
SDC3-202ENST00000339394 TLCD2A6NGC4 264 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 RASSF9O75901 435 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 THRAP10827 490 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 CDH3P22223 829 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 KCNA4P22459 653 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 EEF1DP29692 281 aaKnown RBP21.36■■□□□ 1.01
SDC3-202ENST00000339394 HPDP32754 393 aaPredicted RBP21.36■■□□□ 1.01
SDC3-202ENST00000339394 PDX1P52945 283 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 SLC18A1P54219 525 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 PRKAA2P54646 552 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 CDCP2Q5VXM1 449 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 KIAA1614Q5VZ46 1190 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 ICE2Q659A1 982 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 LCTLQ6UWM7 567 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 B3GNT8Q7Z7M8 397 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 SLC22A9Q8IVM8 553 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 SLITRK4Q8IW52 837 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 CCDC126Q96EE4 140 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms