RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 MN1Q10571 1320 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 PDCD11Q14690 1871 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 H3BM21 787 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 SMLR1H3BR10 107 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 TLR5O60602 858 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 WARSP23381 471 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 WEE1P30291 646 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 PIK3CBP42338 1070 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 GDF5P43026 501 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 MAGEA11P43364 429 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 OR3A3P47888 321 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 NPRL3Q12980 569 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 PTPRNQ16849 979 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 CDONQ4KMG0 1287 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 MRNIPQ6NTE8 343 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 AGMOQ6ZNB7 445 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 TSPYL5Q86VY4 417 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 RIOX2Q8IUF8 465 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 LIX1Q8N485 282 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 PIK3R3Q92569 461 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 GGHQ92820 318 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 B3GALT6Q96L58 329 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 DERL2Q9GZP9 239 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 MIOSQ9NXC5 875 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 RAPGEFL1Q9UHV5 662 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 PIN4Q9Y237 131 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 PCDHGA6Q9Y5G7 932 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 PEX16Q9Y5Y5 336 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 A0A1W2PQ72 361 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 OR6C70A6NIJ9 312 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 GABRDO14764 452 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 TSPAN9O75954 239 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 AKT1P31749 480 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 MRPL19P49406 292 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 SUOXP51687 545 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 STC1P52823 247 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 DDR2Q16832 855 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 TYSND1Q2T9J0 566 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 SV2CQ496J9 727 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 MARC1Q5VT66 337 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 SUSD1Q6UWL2 747 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 GPSM1Q86YR5 675 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 VANGL1Q8TAA9 524 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 GPR151Q8TDV0 419 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 OR5M11Q96RB7 305 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 SLC30A2Q9BRI3 323 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 TM9SF3Q9HD45 589 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 C1orf109Q9NX04 203 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 TAS2R13Q9NYV9 303 aa13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 ZNF490Q9ULM2 529 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-201ENST00000331194 GUCA1CO95843 209 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 PROX2Q3B8N5 592 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 SDE2Q6IQ49 451 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 VN1R5Q7Z5H4 357 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 AADATQ8N5Z0 425 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 MCCC1Q96RQ3 725 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 TSEN34Q9BSV6 310 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 DPY30Q9C005 99 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 CCNB1IP1Q9NPC3 277 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 MKLN1Q9UL63 735 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 A0A0B4J293 547 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 LCHNA4D1U4 455 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 E9PAM4 449 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 GFRA2O00451 464 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 OR7A17O14581 309 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 ADORA3P0DMS8 318 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 RRM2P31350 389 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 IDH2P48735 452 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 RGS6P49758 472 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 DGKEP52429 567 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 HOXC5Q00444 222 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 ZNF33AQ06730 810 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 ARHGAP1Q07960 439 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 PAN2Q504Q3 1202 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 GLRX5Q86SX6 157 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 GLCCI1Q86VQ1 547 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 LSMEM1Q8N8F7 131 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 TMEM40Q8WWA1 233 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 RNF31Q96EP0 1072 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 LINGO1Q96FE5 620 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 NARFLQ9H6Q4 476 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 ACOXLQ9NUZ1 547 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 TMEM184CQ9NVA4 438 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 FKBP14Q9NWM8 211 aa13.1□□□□□ -0.31
CCDC88C-201ENST00000331194 UPK3BL1B0FP48 263 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 UPK3BL2E5RIL1 263 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 MUSKO15146 869 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 RETP07949 1114 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 NRIP1P48552 1158 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 ARHGDIAP52565 204 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 SMARCB1Q12824 385 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 KRR1Q13601 381 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 RAB41Q5JT25 222 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 LIMS2Q7Z4I7 341 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 CIR1Q86X95 450 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 SLC7A6Q92536 515 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 COQ8BQ96D53 544 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 SLA2Q9H6Q3 261 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 CATSPERBQ9H7T0 1116 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 NPAP1Q9NZP6 1156 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms