RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ARSFP54793 590 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 CASP6P55212 293 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 SCARF1Q14162 830 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 CDK10Q15131 360 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 IRF4Q15306 451 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 USP30Q70CQ3 517 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 TPRA1Q86W33 373 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 KAT2AQ92830 837 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 ARHGAP9Q9BRR9 750 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 POMKQ9H5K3 350 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 OLAHQ9NV23 265 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 SAGE1Q9NXZ1 904 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 TSPAN16Q9UKR8 245 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 TCAF1Q9Y4C2 921 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 RTCAO00442 366 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ZBTB14O43829 449 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 SLC6A2P23975 617 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 RFC2P35250 354 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CRISP1P54107 249 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 SLC25A3Q00325 362 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 RPL6Q02878 288 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 LARS2Q15031 903 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 MAPK14Q16539 360 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CDNFQ49AH0 187 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ARSHQ5FYA8 562 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ATXN7L2Q5T6C5 722 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 GPRC6AQ5T6X5 926 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 RNF19BQ6ZMZ0 732 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CHST9Q7L1S5 443 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 PLD5Q8N7P1 536 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 TEX19Q8NA77 164 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 GALNT11Q8NCW6 608 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 TMEM159Q96B96 161 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 C12orf43Q96C57 262 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 COLEC11Q9BWP8 271 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 MDC1Q14676 2089 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 A0A087X0B3 334 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 FUOMA2VDF0 154 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 IRAK2O43187 625 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 NOBOXO60393 691 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 GDI2P50395 445 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 GALK1P51570 392 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 GPR50Q13585 617 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 RCAN2Q14206 197 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 PAFAH1B3Q15102 231 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 RSU1Q15404 277 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 SNAPC1Q16533 368 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 FUT11Q495W5 492 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ESCO2Q56NI9 601 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 OTUD1Q5VV17 481 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 KLHL35Q6PF15 583 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 NECAB2Q7Z6G3 386 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ZSCAN4Q8NAM6 433 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 TBC1D15Q8TC07 691 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 UPF1Q92900 1129 aaKnown RBP eCLIP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 UBXN10Q96LJ8 280 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 GATA5Q9BWX5 397 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 SLCO5A1Q9H2Y9 848 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 OR51B5Q9H339 312 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 OPA3Q9H6K4 179 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 GLOD4Q9HC38 313 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ARFGEF3Q5TH69 2177 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 POLEQ07864 2286 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 TEX13CA0A0J9YWL9 993 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ARRDC5A6NEK1 342 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 TCAF2A6NFQ2 919 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 UNC119BA6NIH7 251 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CLCA1A8K7I4 914 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CASKO14936 926 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 MFSD11O43934 449 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ZMPSTE24O75844 475 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 DNTTP04053 509 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 RLN2P04090 185 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 C6P13671 934 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 SOX11P35716 441 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 MMP12P39900 470 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CAP2P40123 477 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ALDH3B2P48448 385 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 PSEN2P49810 448 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 IDH3AP50213 366 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CDH11P55287 796 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ADAM8P78325 824 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CACNG1Q06432 222 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CAMK2DQ13557 499 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 QPCTQ16769 361 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CA9Q16790 459 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 UGT2A3Q6UWM9 527 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 DENND5BQ6ZUT9 1274 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 KCNK18Q7Z418 384 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 TRMT11Q7Z4G4 463 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF567Q8N184 647 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ARMC10Q8N2F6 343 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 OR8K5Q8NH50 307 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 LILRB4Q8NHJ6 448 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 TNFAIP8L1Q8WVP5 186 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ATG4AQ8WYN0 398 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 HIPK2Q9H2X6 1198 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 XKR8Q9H6D3 395 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 PIN4Q9Y237 131 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 COLEC10Q9Y6Z7 277 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms