RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 KLK4Q9Y5K2 254 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 ADGRG4Q8IZF6 3080 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 PDZD2O15018 2839 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 CELSR1Q9NYQ6 3014 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 CCDC162PA2VCL2 907 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 RASGRF2O14827 1237 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 GPC4O75487 556 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 PTMAP06454 111 aaKnown RBP14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 ZGLP1P0C6A0 271 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 MCM3P25205 808 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 OR1D4P47884 311 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 KLC1Q07866 573 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 HSPA14Q0VDF9 509 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 Q0VFX4 171 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 AARS2Q5JTZ9 985 aaKnown RBP14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 NAPRTQ6XQN6 538 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 RIPOR1Q6ZS17 1223 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 GDF7Q7Z4P5 450 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 FAM20CQ8IXL6 584 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 FAM71DQ8N9W8 422 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 LMNTD1Q8N9Z9 388 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 STT3BQ8TCJ2 826 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 HAS2Q92819 552 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 FAM118BQ9BPY3 351 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 ZNF160Q9HCG1 818 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 C3orf18Q9UK00 162 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 DCHS2Q6V1P9 2916 aa14.12□□□□□ -0.15
CCDC88B-201ENST00000301897 NSG1A0A0A6YYJ2 146 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 HYKKA2RU49 373 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 OR51F1A6NGY5 319 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 PRPF4O43172 522 aaKnown RBP eCLIP14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 OR1I1O60431 355 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 KLHL18O94889 574 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 SLCO2B1O94956 709 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 METTL18O95568 372 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 CRYABP02511 175 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 CXCR2P25025 360 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 CCR7P32248 378 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 CYLC1P35663 651 aaPredicted RBP14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 SOX11P35716 441 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 GRIA3P42263 894 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 TNFSF10P50591 281 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 CSE1LP55060 971 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 VSX2P58304 361 aaPredicted RBP14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 CDH17Q12864 832 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 ZXDCQ2QGD7 858 aaPredicted RBP14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 MUM1Q2TAK8 710 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 WASHC2DQ5SRD0 308 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 ATG9BQ674R7 924 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 GFRALQ6UXV0 394 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 RPTNQ6XPR3 784 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 NDUFAF7Q7L592 441 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 DNAAF3Q8N9W5 541 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 DNAJB8Q8NHS0 232 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 CFAP61Q8NHU2 1237 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 HDAC10Q969S8 669 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 RAD51AP1Q96B01 352 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 IGSF5Q9NSI5 407 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 CDC14AQ9UNH5 594 aa14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 MRPS2Q9Y399 296 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-201ENST00000301897 IGLV3-12A0A075B6K2 115 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 A0A1W2PQ72 361 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 KPNA5O15131 536 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 PHF2O75151 1096 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 BMP10O95393 424 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 GOT2P00505 430 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 SERPINA7P05543 415 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 UQCRHP07919 91 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 PRR35P0CG20 571 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 ERVK-10P10266 1014 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 POU3F2P20265 443 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 PTMSP20962 102 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 FBLP22087 321 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 AOAHP28039 575 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 CCNFP41002 786 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 TDGF1P3P51864 188 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 EMP3P54852 163 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 RBPJQ06330 500 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 CCDC38Q502W7 563 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 FASTKD1Q53R41 847 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 CNSTQ6PJW8 725 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 TMEM207Q6UWW9 146 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 BNC2Q6ZN30 1099 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 TAX1BP1Q86VP1 789 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 ZNF808Q8N4W9 903 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 C2orf73Q8N5S3 287 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 METTL27Q8N6F8 245 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 CATSPER1Q8NEC5 780 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 OR13J1Q8NGT2 312 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 OR4L1Q8NH43 312 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 SUN3Q8TAQ9 357 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 HMGCLL1Q8TB92 370 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 ITLN2Q8WWU7 325 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 PEX13Q92968 403 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 MVB12AQ96EY5 273 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 RNF32Q9H0A6 362 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 C14orf105Q9NVL8 296 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 RIC8BQ9NVN3 520 aa14.1□□□□□ -0.15
CCDC88B-201ENST00000301897 ABI3Q9P2A4 366 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms