RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 SNX5Q9Y5X3 404 aa13.12□□□□□ -0.31
CTDP1-202ENST00000299543 GLUD1P00367 558 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 IGHA2P01877 340 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 ABCB1P08183 1280 aaPredicted RBP13.11□□□□□ -0.31
CTDP1-202ENST00000299543 NFATC2Q13469 925 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 CRTC3Q6UUV7 619 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 RFLNAQ6ZTI6 216 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 ZBTB2Q8N680 514 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 C1QTNF3Q9BXJ4 246 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 LHX3Q9UBR4 397 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 CD84Q9UIB8 345 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 GLYATL1P3A0A0U1RQE8 302 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 UPK1AO00322 258 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 TULP3O75386 442 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 STK16O75716 305 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 CRYZL1O95825 349 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 BMP4P12644 408 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 HNF1BP35680 557 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 RAB15P59190 212 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 ILF2Q12905 390 aaKnown RBP13.11□□□□□ -0.31
CTDP1-202ENST00000299543 PCBP2Q15366 365 aaKnown RBP eCLIP13.11□□□□□ -0.31
CTDP1-202ENST00000299543 NDUFA5Q16718 116 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 NEK10Q6ZWH5 1172 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 TMCO2Q7Z6W1 182 aaPredicted RBP13.11□□□□□ -0.31
CTDP1-202ENST00000299543 RIMKLAQ8IXN7 391 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 DPP10Q8N608 796 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 NETO1Q8TDF5 533 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 MYOCQ99972 504 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 CLSTN3Q9BQT9 956 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 INPP5KQ9BT40 448 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 EBPLQ9BY08 206 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 ATG10Q9H0Y0 220 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 P2RY12Q9H244 342 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 ELOVL6Q9H5J4 265 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 FAM118AQ9NWS6 357 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 SLC25A37Q9NYZ2 338 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 PIKFYVEQ9Y2I7 2098 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 MITFO75030 526 aaPredicted RBP13.11□□□□□ -0.31
CTDP1-202ENST00000299543 ITPKAP23677 461 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 S100A3P33764 101 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 RPIAP49247 311 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 SREBF2Q12772 1141 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 TSTA3Q13630 321 aaPredicted RBP13.11□□□□□ -0.31
CTDP1-202ENST00000299543 ZNF773Q6PK81 442 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 C10orf111Q8N326 155 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 PAPD5Q8NDF8 572 aaKnown RBP13.11□□□□□ -0.31
CTDP1-202ENST00000299543 SLC22A17Q8WUG5 538 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 APOLD1Q96LR9 279 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 ZNF641Q96N77 438 aaPredicted RBP13.11□□□□□ -0.31
CTDP1-202ENST00000299543 PSD2Q9BQI7 771 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 CD244Q9BZW8 370 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 RIBC2Q9H4K1 309 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 DLGAP4Q9Y2H0 992 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 PCDHB14Q9Y5E9 798 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 PCDHB1Q9Y5F3 818 aa13.11□□□□□ -0.31
CTDP1-202ENST00000299543 NADKO95544 446 aaPredicted RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 BCKDHAP12694 445 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 PTPN2P17706 415 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 MLLT3P42568 568 aaPredicted RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 ATN1P54259 1190 aaPredicted RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 ELAVL2Q12926 359 aaKnown RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 IRAK1BP1Q5VVH5 260 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 TTC23Q5W5X9 447 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 NECAB2Q7Z6G3 386 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 CNIH3Q8TBE1 160 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 RAET1EQ8TD07 263 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 ISG20Q96AZ6 181 aaKnown RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 EFHD2Q96C19 240 aaPredicted RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 IRF2BPLQ9H1B7 796 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 SATB2Q9UPW6 733 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 PDE10AQ9Y233 779 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 ORC6Q9Y5N6 252 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 FNDC1Q4ZHG4 1894 aaPredicted RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 SCN4AP35499 1836 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 SSX4O60224 188 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 PQBP1O60828 265 aaKnown RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 CCNKO75909 580 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 FKBP9O95302 570 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 CPSF4O95639 269 aaKnown RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 CKMP06732 381 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 BPIP17213 487 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 GJA1P17302 382 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 FSHRP23945 695 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 TACR1P25103 407 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 TTKP33981 857 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 HNRNPFP52597 415 aaKnown RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 SF1Q15637 639 aaKnown RBP13.1□□□□□ -0.31
CTDP1-202ENST00000299543 FKBP9P1Q75LS8 142 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 TMEM179BQ7Z7N9 219 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 EID3Q8N140 333 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 HCAR2Q8TDS4 363 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 TP53INP1Q96A56 240 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 EMILIN2Q9BXX0 1053 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 AMBRA1Q9C0C7 1298 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 MTRRQ9UBK8 725 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 DNAJB9Q9UBS3 223 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 VWA8A3KMH1 1905 aa13.1□□□□□ -0.31
CTDP1-202ENST00000299543 A0A1W2PQ45 241 aaPredicted RBP13.09□□□□□ -0.31
CTDP1-202ENST00000299543 A0A1W2PQY0 241 aa13.09□□□□□ -0.31
CTDP1-202ENST00000299543 hCG_2039718K7EN88 272 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms