RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TBCDQ9BTW9 1192 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 KAT8Q9H7Z6 458 aaKnown RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 ADGRE2Q9UHX3 823 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 DMTF1Q9Y222 760 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 KIAA0100Q14667 2235 aaKnown RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 CROCCQ5TZA2 2017 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 PSMD11O00231 422 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 CXCR6O00574 342 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 VILLO15195 856 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 SCELO95171 688 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 PGS1Q32NB8 556 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 KCTD21Q4G0X4 260 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 XKR6Q5GH73 641 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 GCNT7Q6ZNI0 430 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 FBXO30Q8TB52 745 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 MAGEE2Q8TD90 523 aaPredicted RBP23.27■■□□□ 1.32
TRIM54-201ENST00000296098 FAM162AQ96A26 154 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 FCRL1Q96LA6 429 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 CCDC138Q96M89 665 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 WRAP53Q9BUR4 548 aaKnown RBP23.27■■□□□ 1.32
TRIM54-201ENST00000296098 STOX2Q9P2F5 926 aaPredicted RBP23.27■■□□□ 1.32
TRIM54-201ENST00000296098 LIMD1Q9UGP4 676 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 SLC27A6Q9Y2P4 619 aa23.27■■□□□ 1.32
TRIM54-201ENST00000296098 LAMA2P24043 3122 aaKnown RBP23.27■■□□□ 1.32
TRIM54-201ENST00000296098 PDE4DIPQ5VU43 2346 aa23.27■■□□□ 1.31
TRIM54-201ENST00000296098 SLC5A10A0PJK1 596 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 CD22P20273 847 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 CAPGP40121 348 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 BDKRB1P46663 353 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 NRIP1P48552 1158 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 TMEM115Q12893 351 aaPredicted RBP23.26■■□□□ 1.31
TRIM54-201ENST00000296098 NOXRED1Q6NXP6 359 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 AGTRAPQ6RW13 159 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 ENPP6Q6UWR7 440 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 MSANTD1Q6ZTZ1 278 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 PHACTR4Q8IZ21 702 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 DHRSXQ8N5I4 330 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 TRIML2Q8N7C3 387 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 FAM86B1Q8N7N1 296 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 OR52E4Q8NGH9 312 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 CARS2Q9HA77 564 aaKnown RBP23.26■■□□□ 1.31
TRIM54-201ENST00000296098 NTN4Q9HB63 628 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 E7EQ34 232 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 PER2O15055 1255 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 PRSS23O95084 383 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 LRATO95237 230 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 POU2F2P09086 479 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 HOXB9P17482 250 aaPredicted RBP23.26■■□□□ 1.31
TRIM54-201ENST00000296098 MAPK9P45984 424 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 TTC33Q6PID6 262 aaPredicted RBP23.26■■□□□ 1.31
TRIM54-201ENST00000296098 ANKRD46Q86W74 232 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 KLHDC8AQ8IYD2 350 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 RNF175Q8N4F7 328 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 LILRA3Q8N6C8 439 aaPredicted RBP23.26■■□□□ 1.31
TRIM54-201ENST00000296098 RSPRY1Q96DX4 576 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 DTD2Q96FN9 168 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 MED8Q96G25 268 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 FBXL20Q96IG2 436 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 INPP5KQ9BT40 448 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 HPS4Q9NQG7 708 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 FADS3Q9Y5Q0 445 aa23.26■■□□□ 1.31
TRIM54-201ENST00000296098 CCDC160A6NGH7 325 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 UPK1AO00322 258 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 PRNPP04156 253 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 PBLDP30039 288 aaPredicted RBP23.25■■□□□ 1.31
TRIM54-201ENST00000296098 TUBA4AP68366 448 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 NAE1Q13564 534 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 TMEM214Q6NUQ4 689 aaKnown RBP23.25■■□□□ 1.31
TRIM54-201ENST00000296098 BORAQ6PGQ7 559 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 GPR180Q86V85 440 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 CALHM3Q86XJ0 350 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 SLC22A15Q8IZD6 547 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 ZNF786Q8N393 782 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 PHOSPHO2Q8TCD6 241 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 FOXJ1Q92949 421 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 NCLNQ969V3 563 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 FAM120BQ96EK7 910 aaKnown RBP23.25■■□□□ 1.31
TRIM54-201ENST00000296098 SLC47A1Q96FL8 570 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 AURKBQ96GD4 344 aaPredicted RBP23.25■■□□□ 1.31
TRIM54-201ENST00000296098 COQ10AQ96MF6 247 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 HHIPQ96QV1 700 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 EBPLQ9BY08 206 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 DPP7Q9UHL4 492 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 C5orf67F2Z3F1 127 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 PCNAP12004 261 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 SH3BGRP55822 239 aaPredicted RBP23.25■■□□□ 1.31
TRIM54-201ENST00000296098 DOC2AQ14183 400 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 CYBRD1Q53TN4 286 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 CWF19L1Q69YN2 538 aaKnown RBP23.25■■□□□ 1.31
TRIM54-201ENST00000296098 TMEM220Q6QAJ8 160 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 TBPL2Q6SJ96 375 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 WDR20Q8TBZ3 569 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 NELL1Q92832 810 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 TMBIM1Q969X1 311 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 NXPE3Q969Y0 559 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 NMD3Q96D46 503 aaKnown RBP23.25■■□□□ 1.31
TRIM54-201ENST00000296098 EGLN2Q96KS0 407 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 FOPNLQ96NB1 174 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 VCX3AQ9NNX9 186 aa23.25■■□□□ 1.31
TRIM54-201ENST00000296098 H0Y858 1186 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms