RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZBTB26Q9HCK0 441 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 TMED5Q9Y3A6 229 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 OR5K4A6NMS3 321 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 PCDH7O60245 1069 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 DEAF1O75398 565 aaPredicted RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 SLC16A8O95907 504 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 CD160O95971 181 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 PRPS1L1P21108 318 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 GRIA3P42263 894 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 CRATP43155 626 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 TBPL1P62380 186 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 DAB2P98082 770 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 C6orf136Q5SQH8 315 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 BHLHB9Q6PI77 547 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 COL26A1Q96A83 441 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 CLPTM1LQ96KA5 538 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 VPS35Q96QK1 796 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 SPATA6Q9NWH7 488 aaPredicted RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 GIMAP2Q9UG22 337 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 NUMA1Q14980 2115 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 PRAMEF26H0Y7S4 382 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 APBB3O95704 486 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 C1GALT1C1LP0DN25 315 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 ALPPL2P10696 532 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF23P17027 643 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 TNNI3P19429 210 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 PTX3P26022 381 aaPredicted RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 NUDT1P36639 197 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 PLA2G16P53816 162 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 HEPACAMQ14CZ8 416 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 WSCD2Q2TBF2 565 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 SPIN4Q56A73 249 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 HENMT1Q5T8I9 393 aaKnown RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 IRGCQ6NXR0 463 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 GKN2Q86XP6 184 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 HPS6Q86YV9 775 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 C1orf52Q8N6N3 182 aaKnown RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 FRS2Q8WU20 508 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 TOE1Q96GM8 510 aaKnown RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 IL17FQ96PD4 163 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 SORT1Q99523 831 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 MEAF6Q9HAF1 191 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 AKAP7Q9P0M2 348 aaPredicted RBP11.26□□□□□ -0.61
VPS4A-201ENST00000254950 ANAPC2Q9UJX6 822 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 DNAJC15Q9Y5T4 150 aa11.26□□□□□ -0.61
VPS4A-201ENST00000254950 C2CD4DB7Z1M9 353 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 THEGLP0DJG4 465 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 CDH1P12830 882 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 PRKAG1P54619 331 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 MANFP55145 182 aaKnown RBP11.25□□□□□ -0.61
VPS4A-201ENST00000254950 ETFBKMTQ8IXQ9 262 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 PDPRQ8NCN5 879 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 LKAAEAR1Q8TD35 194 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 LMX1AQ8TE12 382 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 SETD7Q8WTS6 366 aaKnown RBP11.25□□□□□ -0.61
VPS4A-201ENST00000254950 TSACCQ96A04 125 aaPredicted RBP11.25□□□□□ -0.61
VPS4A-201ENST00000254950 RSPRY1Q96DX4 576 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 CMTM7Q96FZ5 175 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 RNF145Q96MT1 663 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 RPP25Q9BUL9 199 aaKnown RBP11.25□□□□□ -0.61
VPS4A-201ENST00000254950 SMOXQ9NWM0 555 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 ADPRHL2Q9NX46 363 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 STOX2Q9P2F5 926 aaPredicted RBP11.25□□□□□ -0.61
VPS4A-201ENST00000254950 KLHL3Q9UH77 587 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 MRPS33Q9Y291 106 aaKnown RBP11.25□□□□□ -0.61
VPS4A-201ENST00000254950 LDLRP01130 860 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 FGF4P08620 206 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 SRFP11831 508 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 CLDN2P57739 230 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 PRRT3Q5FWE3 981 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 PRR23CQ6ZRP0 262 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 GPR135Q8IZ08 494 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 SLC44A3Q8N4M1 653 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 OR2L2Q8NH16 312 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 ASB11Q8WXH4 323 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 SLC30A3Q99726 388 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 PLA2G2FQ9BZM2 168 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 RSPH9Q9H1X1 276 aaPredicted RBP11.25□□□□□ -0.61
VPS4A-201ENST00000254950 P2RY12Q9H244 342 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 XKR8Q9H6D3 395 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 SPATA7Q9P0W8 599 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 TMEM265A0A087WTH1 108 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 ARHGEF33A8MVX0 844 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 CFIP05156 583 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 JUPP14923 745 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 GLULP15104 373 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 SERPINB1P30740 379 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 RFX3P48380 749 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 CCT8P50990 548 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 ATP4BP51164 291 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 HTR4Q13639 388 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 DOC2AQ14183 400 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 ELOCQ15369 112 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 PPP1R3AQ16821 1122 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 TMEM215Q68D42 235 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 USP30Q70CQ3 517 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 SLC9B2Q86UD5 537 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 TBC1D21Q8IYX1 336 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 ST13P4Q8IZP2 240 aaPredicted RBP11.25□□□□□ -0.61
VPS4A-201ENST00000254950 SIX5Q8N196 739 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms