RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 OMA1Q96E52 524 aa14□□□□□ -0.17
SDC1-201ENST00000254351 MAP6Q96JE9 813 aa14□□□□□ -0.17
SDC1-201ENST00000254351 TSPAN18Q96SJ8 248 aa14□□□□□ -0.17
SDC1-201ENST00000254351 NMUR1Q9HB89 426 aa14□□□□□ -0.17
SDC1-201ENST00000254351 SNTG1Q9NSN8 517 aa14□□□□□ -0.17
SDC1-201ENST00000254351 GPRC5BQ9NZH0 403 aa14□□□□□ -0.17
SDC1-201ENST00000254351 KCNH4Q9UQ05 1017 aa14□□□□□ -0.17
SDC1-201ENST00000254351 COL1A2P08123 1366 aa14□□□□□ -0.17
SDC1-201ENST00000254351 OTOFQ9HC10 1997 aa14□□□□□ -0.17
SDC1-201ENST00000254351 A0A1W2PQ72 361 aa14□□□□□ -0.17
SDC1-201ENST00000254351 MEIOCA2RUB1 952 aa14□□□□□ -0.17
SDC1-201ENST00000254351 UNCXA6NJT0 531 aa14□□□□□ -0.17
SDC1-201ENST00000254351 A8MX80 341 aa14□□□□□ -0.17
SDC1-201ENST00000254351 SCAMP3O14828 347 aaKnown RBP14□□□□□ -0.17
SDC1-201ENST00000254351 IRAK2O43187 625 aa14□□□□□ -0.17
SDC1-201ENST00000254351 SCO2O43819 266 aa14□□□□□ -0.17
SDC1-201ENST00000254351 RPP40O75818 363 aaKnown RBP14□□□□□ -0.17
SDC1-201ENST00000254351 CPSF4O95639 269 aaKnown RBP14□□□□□ -0.17
SDC1-201ENST00000254351 ALDH6A1Q02252 535 aaKnown RBP14□□□□□ -0.17
SDC1-201ENST00000254351 ZNF235Q14590 738 aa14□□□□□ -0.17
SDC1-201ENST00000254351 TSTQ16762 297 aaKnown RBP14□□□□□ -0.17
SDC1-201ENST00000254351 PIK3R6Q5UE93 754 aa14□□□□□ -0.17
SDC1-201ENST00000254351 RAB43Q86YS6 212 aa14□□□□□ -0.17
SDC1-201ENST00000254351 UBQLNLQ8IYU4 475 aa14□□□□□ -0.17
SDC1-201ENST00000254351 TSPEARQ8WU66 669 aa14□□□□□ -0.17
SDC1-201ENST00000254351 SNAPC3Q92966 411 aa14□□□□□ -0.17
SDC1-201ENST00000254351 SMARCD1Q96GM5 515 aa14□□□□□ -0.17
SDC1-201ENST00000254351 KATNAL1Q9BW62 490 aa14□□□□□ -0.17
SDC1-201ENST00000254351 ABCB9Q9NP78 766 aa14□□□□□ -0.17
SDC1-201ENST00000254351 C1orf109Q9NX04 203 aa14□□□□□ -0.17
SDC1-201ENST00000254351 PCDH10Q9P2E7 1040 aa14□□□□□ -0.17
SDC1-201ENST00000254351 MALT1Q9UDY8 824 aa14□□□□□ -0.17
SDC1-201ENST00000254351 A0A0X1KG70 313 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 HHLA1C9JL84 531 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 ANKRD28O15084 1053 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 POMCP01189 267 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 P2RX3P56373 397 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 IL2P60568 153 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 NPRL3Q12980 569 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 CAMK2GQ13555 558 aaPredicted RBP13.99□□□□□ -0.17
SDC1-201ENST00000254351 CCDC85BQ15834 202 aaPredicted RBP13.99□□□□□ -0.17
SDC1-201ENST00000254351 CACHD1Q5VU97 1274 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 SIGIRRQ6IA17 410 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 CHPFQ8IZ52 775 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 DTX3Q8N9I9 347 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 C7orf57Q8NEG2 295 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 CHAC2Q8WUX2 184 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 MAL2Q969L2 176 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 CCDC120Q96HB5 630 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 SDHCQ99643 169 aaPredicted RBP13.99□□□□□ -0.17
SDC1-201ENST00000254351 RRAGCQ9HB90 399 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 THUMPD1Q9NXG2 353 aaKnown RBP13.99□□□□□ -0.17
SDC1-201ENST00000254351 FKBPLQ9UIM3 349 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 WWP2O00308 870 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 GFRA2O00451 464 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 B3GAT3O94766 335 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 TACR1P25103 407 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 TNFSF8P32971 234 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 OR1E2P47887 323 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 EFEMP1Q12805 493 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 GTF2H2Q13888 395 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 GTF2H2CQ6P1K8 395 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 ZNF621Q6ZSS3 439 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 ZNF551Q7Z340 670 aaPredicted RBP13.99□□□□□ -0.17
SDC1-201ENST00000254351 GLT6D1Q7Z4J2 308 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 ABI3BPQ7Z7G0 1075 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 ZNF598Q86UK7 904 aaKnown RBP13.99□□□□□ -0.17
SDC1-201ENST00000254351 LRRTM3Q86VH5 581 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 LINC01465Q8N7H1 131 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 OR8J3Q8NGG0 315 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 GFM1Q96RP9 751 aaKnown RBP13.99□□□□□ -0.17
SDC1-201ENST00000254351 EBPLQ9BY08 206 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 SPEF1Q9Y4P9 236 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 PCDHGC4Q9Y5F7 938 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 PCDHGB1Q9Y5G3 927 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 A0A1W2PQH9 124 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 LCHNA4D1U4 455 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 OR7A17O14581 309 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 AREL1O15033 823 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 DNAJB5O75953 348 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 SCELO95171 688 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 PEX11BO96011 259 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 CKMT1AP12532 417 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 PRKACBP22694 351 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 HOXC5Q00444 222 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 ST3GAL4Q11206 333 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 SHQ1Q6PI26 577 aaKnown RBP13.99□□□□□ -0.17
SDC1-201ENST00000254351 LAX1Q8IWV1 398 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 CLDN19Q8N6F1 224 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 TOP6BLQ8N6T0 577 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 ULK4Q96C45 1275 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 RPRD1AQ96P16 312 aaPredicted RBP13.99□□□□□ -0.17
SDC1-201ENST00000254351 DERL2Q9GZP9 239 aa13.99□□□□□ -0.17
SDC1-201ENST00000254351 A0A0G2JMP0 313 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 TBKBP1A7MCY6 615 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 CENPBD1B2RD01 187 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 GABRDO14764 452 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 ZNF135P52742 658 aaPredicted RBP13.98□□□□□ -0.17
SDC1-201ENST00000254351 ZNF45Q02386 682 aa13.98□□□□□ -0.17
SDC1-201ENST00000254351 PRAMEF19Q5SWL8 479 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms