RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 FLRT2O43155 660 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 KERAO60938 352 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 HNRNPA2B1P22626 353 aaKnown RBP8.43□□□□□ -1.06
VPS4B-201ENST00000238497 NFKBIAP25963 317 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 ITGB7P26010 798 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 RPS21P63220 83 aaKnown RBP8.43□□□□□ -1.06
VPS4B-201ENST00000238497 SQLEQ14534 574 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 INAVAQ3KP66 663 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 C6orf52Q5T4I8 152 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 ANKRD46Q86W74 232 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 RNF175Q8N4F7 328 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 FAM110BQ8TC76 370 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 COPS8Q99627 209 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 PKP2Q99959 881 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 SLC25A23Q9BV35 468 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 C1orf21Q9H246 121 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 LRCH1Q9Y2L9 728 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 PRKAB1Q9Y478 270 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 POLR3HQ9Y535 204 aaPredicted RBP8.43□□□□□ -1.06
VPS4B-201ENST00000238497 LRRC42Q9Y546 428 aa8.43□□□□□ -1.06
VPS4B-201ENST00000238497 ARID1BQ8NFD5 2236 aaPredicted RBP8.43□□□□□ -1.06
VPS4B-201ENST00000238497 CCDC154A6NI56 674 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 FBP2O00757 339 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ZNF821O75541 412 aaPredicted RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 HIST1H2AGP0C0S8 130 aaPredicted RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 HIST1H2ADP20671 130 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 HALP42357 657 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 POLD2P49005 469 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 SLC14A1Q13336 389 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 NFATC2Q13469 925 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ACOX1Q15067 660 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 MAPRE2Q15555 327 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 AP5B1Q2VPB7 878 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 TLDC1Q6P9B6 456 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 Q6ZSR6 202 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 LCA5Q86VQ0 697 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 PGAM4Q8N0Y7 254 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 PQLC1Q8N2U9 271 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 MFSD2AQ8NA29 543 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 OR13H1Q8NG92 308 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 OR4F6Q8NGB9 312 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 HIST1H2AHQ96KK5 128 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 HIST1H2AJQ99878 128 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 H2AFJQ9BTM1 129 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 CCDC28BQ9BUN5 200 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 SUV39H2Q9H5I1 410 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 TFB2MQ9H5Q4 396 aaKnown RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 INTS10Q9NVR2 710 aaKnown RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 OPTCQ9UBM4 332 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 B4GALT6Q9UBX8 382 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 DMTF1Q9Y222 760 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 VPS9D1Q9Y2B5 631 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 MED16Q9Y2X0 877 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 RAD51BO15315 384 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 SMNDC1O75940 238 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 TRBC1P01850 177 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ALOX15P16050 662 aaPredicted RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 HMGCLP35914 325 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 DNAJB13P59910 316 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ERVPABLB-1P60509 514 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ATP6V0D1P61421 351 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 PLOD1Q02809 727 aaPredicted RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 RBBP5Q15291 538 aaKnown RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 SF1Q15637 639 aaKnown RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 LETMD1Q6P1Q0 360 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 DOK6Q6PKX4 331 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ANGPTL8Q6UXH0 198 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 USP45Q70EL2 814 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 RETREG3Q86VR2 466 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 RBFAQ8N0V3 343 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 TTC30BQ8N4P2 665 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 PIH1D2Q8WWB5 315 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ELMO1Q92556 727 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 TSSK3Q96PN8 268 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 PLEKHG4BQ96PX9 1271 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 SYNDIG1Q9H7V2 258 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 SPAG4Q9NPE6 437 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 RNF11Q9Y3C5 154 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 FADS3Q9Y5Q0 445 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 POM121BA6NF01 834 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 PDLIM1O00151 329 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 FPGTO14772 594 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ESR1P03372 595 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 CAPN3P20807 821 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ETV3P41162 512 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 RPIAP49247 311 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 MTPNP58546 118 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 GTF2H2Q13888 395 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 RFTN1Q14699 578 aaPredicted RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 PTGR1Q14914 329 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 PGS1Q32NB8 556 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 OTUD3Q5T2D3 398 aaPredicted RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ERAP2Q6P179 960 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 GTF2H2CQ6P1K8 395 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 SLC2A7Q6PXP3 512 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 CRTC1Q6UUV9 634 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 DHRS13Q6UX07 377 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 DHFR2Q86XF0 187 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 MARCH9Q86YJ5 346 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms