RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 FAM155BO75949 473 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 C1QAP02745 245 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 FAM153BP0C7A2 387 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 MPC1LP0DKB6 136 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 MAP4P27816 1152 aaKnown RBP17.23■□□□□ 0.35
CLN3-247ENST00000636351 PKLRP30613 574 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 SPRP35270 261 aaPredicted RBP17.23■□□□□ 0.35
CLN3-247ENST00000636351 PGGT1BP53609 377 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 PMS2P54278 862 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 RAB15P59190 212 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 IL2P60568 153 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 TIAL1Q01085 375 aaKnown RBP eCLIP17.23■□□□□ 0.35
CLN3-247ENST00000636351 TLE1Q04724 770 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 KCNAB2Q13303 367 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 ZNF460Q14592 562 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 USP10Q14694 798 aaKnown RBP17.23■□□□□ 0.35
CLN3-247ENST00000636351 FAM153CQ494X1 144 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 GRTP1Q5TC63 336 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 PTRH1Q86Y79 214 aaKnown RBP17.23■□□□□ 0.35
CLN3-247ENST00000636351 EEF1AKMT1Q8WVE0 214 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 RAD51AP1Q96B01 352 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 TSPAN17Q96FV3 270 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 ACSS3Q9H6R3 686 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 ANKZF1Q9H8Y5 726 aa17.23■□□□□ 0.35
CLN3-247ENST00000636351 MTO1Q9Y2Z2 717 aaKnown RBP17.23■□□□□ 0.35
CLN3-247ENST00000636351 NAV2Q8IVL1 2488 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 A0A087WUV0 522 aaPredicted RBP17.22■□□□□ 0.35
CLN3-247ENST00000636351 PABPN1LA6NDY0 278 aaKnown RBP17.22■□□□□ 0.35
CLN3-247ENST00000636351 ARHGEF33A8MVX0 844 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 C2orf74A8MZ97 194 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 MATN4O95460 622 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 SYF2O95926 243 aaKnown RBP17.22■□□□□ 0.35
CLN3-247ENST00000636351 C9P02748 559 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 CD9P21926 228 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 TNFRSF8P28908 595 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 SEPHS1P49903 392 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 RAB28P51157 221 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 TAS2R39P59534 338 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 POU4F1Q01851 419 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 CACHD1Q5VU97 1274 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 UBE2R2Q712K3 238 aaPredicted RBP17.22■□□□□ 0.35
CLN3-247ENST00000636351 TRMT10CQ7L0Y3 403 aaKnown RBP17.22■□□□□ 0.35
CLN3-247ENST00000636351 TAX1BP1Q86VP1 789 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 BMPERQ8N8U9 685 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 EIF1ADQ8N9N8 165 aaKnown RBP17.22■□□□□ 0.35
CLN3-247ENST00000636351 UBXN4Q92575 508 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 IL17FQ96PD4 163 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 GPR22Q99680 433 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 CTRCQ99895 268 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 RAB11FIP5Q9BXF6 653 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 ACTR10Q9NZ32 417 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 OR6C2Q9NZP2 312 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 PDP2Q9P2J9 529 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 EPHA6Q9UF33 1036 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 IKBKGQ9Y6K9 419 aa17.22■□□□□ 0.35
CLN3-247ENST00000636351 PTPN13Q12923 2485 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 PIPSLA2A3N6 862 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 KRT87PA6NCN2 255 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 TLCD2A6NGC4 264 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 ZNF891A8MT65 544 aaPredicted RBP17.21■□□□□ 0.35
CLN3-247ENST00000636351 MATN2O00339 956 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 BTN3A3O00478 584 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 RASGRF2O14827 1237 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 KIF1CO43896 1103 aaKnown RBP17.21■□□□□ 0.35
CLN3-247ENST00000636351 PSIP1O75475 530 aaKnown RBP17.21■□□□□ 0.35
CLN3-247ENST00000636351 MYBL2P10244 700 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 CDH3P22223 829 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 CCR10P46092 362 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 ARL4DP49703 201 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 CCSMST1Q4G0I0 132 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.21■□□□□ 0.35
CLN3-247ENST00000636351 PRSS42Q7Z5A4 293 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 C2orf73Q8N5S3 287 aaPredicted RBP17.21■□□□□ 0.35
CLN3-247ENST00000636351 TEFMQ96QE5 360 aaKnown RBP17.21■□□□□ 0.35
CLN3-247ENST00000636351 CD180Q99467 661 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 MCMBPQ9BTE3 642 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 RAB33BQ9H082 229 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 CAB39LQ9H9S4 337 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 GPAMQ9HCL2 828 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 PILRAQ9UKJ1 303 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 POMT2Q9UKY4 750 aa17.21■□□□□ 0.35
CLN3-247ENST00000636351 POC1B-GALNT4F8VUJ3 575 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 NKX2-8O15522 239 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 ZBTB14O43829 449 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 C8GP07360 202 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 INHBAP08476 426 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 CHRM5P08912 532 aaPredicted RBP17.2■□□□□ 0.34
CLN3-247ENST00000636351 STMN1P16949 149 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 ZNF37AP17032 561 aaPredicted RBP17.2■□□□□ 0.34
CLN3-247ENST00000636351 CYP2A7P20853 494 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 KPNA2P52292 529 aaKnown RBP17.2■□□□□ 0.34
CLN3-247ENST00000636351 COLEC12Q5KU26 742 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 TAOK1Q7L7X3 1001 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 ARHGAP22Q7Z5H3 698 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 CEP97Q8IW35 865 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 ADGRF3Q8IZF5 1079 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 OR9A1PQ8NGU1 263 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 ASB11Q8WXH4 323 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 MAP3K3Q99759 626 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 ZNF768Q9H5H4 540 aaKnown RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms