RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SDK2Q58EX2 2172 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 A0A1W2PPV9 198 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 FKBP9O95302 570 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 HIST1H2AGP0C0S8 130 aaPredicted RBP19.59■□□□□ 0.73
PTCD3-220ENST00000627371 SLC35E2BP0CK96 405 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 CCDC166P0CW27 439 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 HIST1H2ADP20671 130 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 CNTFP26441 200 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 IMPA1P29218 277 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 OAS2P29728 719 aaKnown RBP19.59■□□□□ 0.73
PTCD3-220ENST00000627371 ARL4DP49703 201 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 CSRP3P50461 194 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 AP1S2P56377 157 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 SH3BP2P78314 561 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 PPP1R3AQ16821 1122 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 CCDC91Q7Z6B0 441 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 TRIM73Q86UV7 250 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 UBLCP1Q8WVY7 318 aaPredicted RBP19.59■□□□□ 0.73
PTCD3-220ENST00000627371 SMPDL3AQ92484 453 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 USP7Q93009 1102 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 HIST1H2AHQ96KK5 128 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 UBXN10Q96LJ8 280 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 TAAR9Q96RI9 348 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 HIST1H2AJQ99878 128 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 H2AFJQ9BTM1 129 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 DDA1Q9BW61 102 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 TRIM54Q9BYV2 358 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 SNX15Q9NRS6 342 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 SOHLH2Q9NX45 425 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 SLC39A1Q9NY26 324 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.59■□□□□ 0.73
PTCD3-220ENST00000627371 STOX2Q9P2F5 926 aaPredicted RBP19.59■□□□□ 0.73
PTCD3-220ENST00000627371 FETUBQ9UGM5 382 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 PCDHGA3Q9Y5H0 932 aa19.59■□□□□ 0.73
PTCD3-220ENST00000627371 PABPN1LA6NDY0 278 aaKnown RBP19.58■□□□□ 0.72
PTCD3-220ENST00000627371 NPEPPSL1A6NEC2 478 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 C9orf172C9J069 976 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 E7ENX8 843 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 CDC7O00311 574 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 NVLO15381 856 aaKnown RBP19.58■□□□□ 0.72
PTCD3-220ENST00000627371 KRT38O76015 456 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 PVRP15151 417 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 SERPINB8P50452 374 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 TAP2Q03519 686 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 TMEM164Q5U3C3 297 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 CYB5D1Q6P9G0 228 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 MBOAT1Q6ZNC8 495 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 ADAMTSL2Q86TH1 951 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 LRRC56Q8IYG6 542 aaPredicted RBP19.58■□□□□ 0.72
PTCD3-220ENST00000627371 SYTL1Q8IYJ3 562 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 C19orf47Q8N9M1 422 aaKnown RBP19.58■□□□□ 0.72
PTCD3-220ENST00000627371 PPFIBP2Q8ND30 876 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 AENQ8WTP8 325 aaKnown RBP19.58■□□□□ 0.72
PTCD3-220ENST00000627371 PMEPA1Q969W9 287 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 ISL2Q96A47 359 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 CTNNAL1Q9UBT7 734 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 CELSR3Q9NYQ7 3312 aa19.58■□□□□ 0.72
PTCD3-220ENST00000627371 SPTBP11277 2137 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 PRAMEF10O60809 474 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 ALDOAP04075 364 aaKnown RBP19.57■□□□□ 0.72
PTCD3-220ENST00000627371 EBLN1P0CF75 366 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 FOLR1P15328 257 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 CD1DP15813 335 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 PSMB5P28074 263 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 GCAP28676 217 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 SLC5A2P31639 672 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 SLC26A3P40879 764 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 ATP6V0D1P61421 351 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 ACY1Q03154 408 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 FOXM1Q08050 763 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 CSHL1Q14406 222 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 KCNAB1Q14722 419 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 TSNQ15631 228 aaKnown RBP19.57■□□□□ 0.72
PTCD3-220ENST00000627371 SF1Q15637 639 aaKnown RBP19.57■□□□□ 0.72
PTCD3-220ENST00000627371 TMTC4Q5T4D3 741 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 DCAF12Q5T6F0 453 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 EMBQ6PCB8 327 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 SUSD1Q6UWL2 747 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 TBC1D1Q86TI0 1168 aaPredicted RBP19.57■□□□□ 0.72
PTCD3-220ENST00000627371 OR2A1Q8NGT9 310 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 ZCCHC14Q8WYQ9 949 aaKnown RBP19.57■□□□□ 0.72
PTCD3-220ENST00000627371 TEFMQ96QE5 360 aaKnown RBP19.57■□□□□ 0.72
PTCD3-220ENST00000627371 OR6C1Q96RD1 312 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 PARD6BQ9BYG5 372 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 ASPSCR1Q9BZE9 553 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 CHRNA10Q9GZZ6 450 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 KLHL25Q9H0H3 589 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 APMAPQ9HDC9 416 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 PDE7BQ9NP56 450 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 ARL15Q9NXU5 204 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 OARD1Q9Y530 152 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 PCDHB11Q9Y5F2 797 aa19.57■□□□□ 0.72
PTCD3-220ENST00000627371 AHCTF1Q8WYP5 2266 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 MAP1BP46821 2468 aaKnown RBP19.56■□□□□ 0.72
PTCD3-220ENST00000627371 A0A087X1B8 175 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 POLR1CO15160 346 aaPredicted RBP19.56■□□□□ 0.72
PTCD3-220ENST00000627371 MAP3K7O43318 606 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 C2P06681 752 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 TYK2P29597 1187 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 RPA3P35244 121 aaPredicted RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms