RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PSIP1O75475 530 aaKnown RBP11.13□□□□□ -0.63
CLIP1-219ENST00000620786 POU2F1P14859 743 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 SCARB2Q14108 478 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 RALGPS1Q5JS13 557 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 CDKN2AIPNLQ96HQ2 116 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 ZNF570Q96NI8 536 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 SPHK2Q9NRA0 654 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 COQ4Q9Y3A0 265 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 GADD45GO95257 159 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 MYCLP1P12525 358 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-219ENST00000620786 NELFEP18615 380 aaKnown RBP11.13□□□□□ -0.63
CLIP1-219ENST00000620786 FAUP35544 74 aaKnown RBP11.13□□□□□ -0.63
CLIP1-219ENST00000620786 SCRN3Q0VDG4 424 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 ATG14Q6ZNE5 492 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 IQCHQ86VS3 1027 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 GIPC3Q8TF64 312 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 RFKQ969G6 155 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 FAM83CQ9BQN1 747 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 TMEM248Q9NWD8 314 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 A0A075B6Q4 140 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 CXCR6O00574 342 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 CDKN1CP49918 316 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-219ENST00000620786 UPP1Q16831 310 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 GALNTL5Q7Z4T8 443 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 ZNF598Q86UK7 904 aaKnown RBP11.13□□□□□ -0.63
CLIP1-219ENST00000620786 ADAM7Q9H2U9 754 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 VPS29Q9UBQ0 182 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 UTS2RQ9UKP6 389 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 AP4B1Q9Y6B7 739 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 COL1A1P02452 1464 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-219ENST00000620786 GRID2O43424 1007 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 ECI2O75521 394 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 PRKAR1AP10644 381 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 PCBP2Q15366 365 aaKnown RBP eCLIP11.13□□□□□ -0.632e-8■■□□□ 11.9
CLIP1-219ENST00000620786 GPR107Q5VW38 600 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 AAGABQ6PD74 315 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 IQCF2Q8IXL9 164 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 ARL10Q8N8L6 244 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 SLC13A3Q8WWT9 602 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 OTUB2Q96DC9 234 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 PLEKHG4BQ96PX9 1271 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 GPR174Q9BXC1 333 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 OR51V1Q9H2C8 321 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 USP29Q9HBJ7 922 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 ABCB10Q9NRK6 738 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 GPR34Q9UPC5 381 aa11.13□□□□□ -0.63
CLIP1-219ENST00000620786 KCPQ6ZWJ8 1503 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 HEPACAM2A8MVW5 462 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 FOXO6A8MYZ6 492 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 ANKRD66B4E2M5 251 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 ZBTB22O15209 634 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 PLIN3O60664 434 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 DBIP07108 87 aaKnown RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 NCK1P16333 377 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 PCSK2P16519 638 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 IL1R2P27930 398 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 HERVK_113P63132 956 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 RPS21P63220 83 aaKnown RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 SPIN4Q56A73 249 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 UBE2J2Q8N2K1 259 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 ERVK-6Q9BXR3 956 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 SLC32A1Q9H598 525 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 CLK4Q9HAZ1 481 aaKnown RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 AK5Q9Y6K8 562 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 RAB25P57735 213 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 SNTA1Q13424 505 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 AMIGO3Q86WK7 504 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 GLB1L3Q8NCI6 653 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 PSMA8Q8TAA3 256 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 LPGAT1Q92604 370 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 CTPS2Q9NRF8 586 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 CDH22Q9UJ99 828 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 DUOX1Q9NRD9 1551 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 DLDP09622 509 aaKnown RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 POLR2CP19387 275 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 VLDLRP98155 873 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 B3GNT6Q6ZMB0 384 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 ERN2Q76MJ5 926 aaKnown RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 SATL1Q86VE3 508 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 OXR1Q8N573 874 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 METTL27Q8N6F8 245 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 CNTD1Q8N815 330 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 PXYLP1Q8TE99 480 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 SLC35F5Q8WV83 523 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 TUBGCP5Q96RT8 1024 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 SLC35A5Q9BS91 424 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 SMURF2Q9HAU4 748 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 FARSBQ9NSD9 589 aaKnown RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 ZCCHC3Q9NUD5 404 aaKnown RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 AJAP1Q9UKB5 411 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 SLC22A14Q9Y267 594 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 PCDHGB5Q9Y5G0 923 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 PRAMEF12O95522 483 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 TCF4P15884 667 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 GKP32189 559 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 IDH3AP50213 366 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 OLR1P78380 273 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 ALG1LQ6GMV1 187 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 DRICH1Q6PGQ1 229 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 FAM131AQ6UXB0 335 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms