RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RAPH1Q70E73 1250 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 CLEC14AQ86T13 490 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 D2HGDHQ8N465 521 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 SPATA6LQ8N4H0 392 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 SMPDL3AQ92484 453 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 USP7Q93009 1102 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 PMEPA1Q969W9 287 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 TAAR9Q96RI9 348 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 DHRS4Q9BTZ2 278 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 PARD6BQ9BYG5 372 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 KLHL25Q9H0H3 589 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 FBXO8Q9NRD0 319 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 SLC39A1Q9NY26 324 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 NOVA2Q9UNW9 492 aaKnown RBP15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 PCDHGA7Q9Y5G6 932 aa15.97■□□□□ 0.15
CCDC28A-202ENST00000611852 NPEPPSL1A6NEC2 478 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 ZNF839A8K0R7 811 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 C9orf172C9J069 976 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 E7ENX8 843 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 ALDOAP04075 364 aaKnown RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 HIST1H2AGP0C0S8 130 aaPredicted RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 CD1DP15813 335 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 HIST1H2ADP20671 130 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 PSMB5P28074 263 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 OAS2P29728 719 aaKnown RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 GMPRP36959 345 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 ARL4DP49703 201 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 AP1S2P56377 157 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 ERVPABLB-1P60509 514 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 TAP2Q03519 686 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 TBC1D25Q3MII6 688 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 SUSD1Q6UWL2 747 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 FAM20CQ8IXL6 584 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 LRRC56Q8IYG6 542 aaPredicted RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 SYTL1Q8IYJ3 562 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 PPFIBP2Q8ND30 876 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 OR2A1Q8NGT9 310 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 AENQ8WTP8 325 aaKnown RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 UBLCP1Q8WVY7 318 aaPredicted RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 HIST1H2AHQ96KK5 128 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 ZNF578Q96N58 590 aaPredicted RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 HIST1H2AJQ99878 128 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 H2AFJQ9BTM1 129 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 UNKQ9C0B0 810 aaKnown RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 B3GNT4Q9C0J1 378 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 SNX15Q9NRS6 342 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 THSD1Q9NS62 852 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 SOHLH2Q9NX45 425 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 STOX2Q9P2F5 926 aaPredicted RBP15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 CTNNAL1Q9UBT7 734 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 APC2O95996 2303 aa15.96■□□□□ 0.15
CCDC28A-202ENST00000611852 NVLO15381 856 aaKnown RBP15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 PRAMEF10O60809 474 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 KRT38O76015 456 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 EBLN1P0CF75 366 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 FOLR1P15328 257 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 CNTFP26441 200 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 SLC5A2P31639 672 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 RAB15P59190 212 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 FOXM1Q08050 763 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 CSHL1Q14406 222 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 TSNQ15631 228 aaKnown RBP15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 SF1Q15637 639 aaKnown RBP15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 EMBQ6PCB8 327 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 TAOK1Q7L7X3 1001 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 ADAMTSL2Q86TH1 951 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 ISL2Q96A47 359 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 OR6C1Q96RD1 312 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 CTRCQ99895 268 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 DDA1Q9BW61 102 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 TRIM54Q9BYV2 358 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 APMAPQ9HDC9 416 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 ARL15Q9NXU5 204 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 UTP6Q9NYH9 597 aaKnown RBP15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 FOXJ2Q9P0K8 574 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 FETUBQ9UGM5 382 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 ACOT9Q9Y305 439 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 PCDHGA3Q9Y5H0 932 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 B3GALT1Q9Y5Z6 326 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 ACACAQ13085 2346 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 PCM1Q15154 2024 aa15.95■□□□□ 0.14
CCDC28A-202ENST00000611852 TMEM8BA6NDV4 472 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 POLR1CO15160 346 aaPredicted RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 FKBP9O95302 570 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 C2P06681 752 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 MAGP20916 626 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 TYK2P29597 1187 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 SLC26A3P40879 764 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 SERPINB8P50452 374 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ATP6V0D1P61421 351 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 DLG1Q12959 904 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 TSTA3Q13630 321 aaPredicted RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 NAA30Q147X3 362 aaPredicted RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ZIC1Q15915 447 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 TMTC4Q5T4D3 741 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 DCAF12Q5T6F0 453 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 TMEM164Q5U3C3 297 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 KIAA1614Q5VZ46 1190 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ADGRD1Q6QNK2 874 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms