RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 C6orf15Q6UXA7 325 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-215ENST00000601150 CDHR3Q6ZTQ4 885 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 MYO1HQ8N1T3 1032 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 ESX1Q8N693 406 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 LINGO1Q96FE5 620 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 PKP4Q99569 1192 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 OLFM1Q99784 485 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 RHOJQ9H4E5 214 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 SMYD2Q9NRG4 433 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 INTS7Q9NVH2 962 aaKnown RBP16.25■□□□□ 0.19
TRIM28-215ENST00000601150 DMGDHQ9UI17 866 aaKnown RBP16.25■□□□□ 0.19
TRIM28-215ENST00000601150 ANKRD12Q6UB98 2062 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 TEX51A0A1B0GUA7 166 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 FAM159BA6NKW6 160 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 ZNF839A8K0R7 811 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 TMEM150CB9EJG8 249 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 K7ENP7 123 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 SYF2O95926 243 aaKnown RBP16.24■□□□□ 0.19
TRIM28-215ENST00000601150 MT-ND3P03897 115 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 C8GP07360 202 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 ABHD18Q0P651 414 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 SRSF6Q13247 344 aaKnown RBP16.24■□□□□ 0.19
TRIM28-215ENST00000601150 ZIC1Q15915 447 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 INO80CQ6PI98 192 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-215ENST00000601150 CEP128Q6ZU80 1094 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 UBE2R2Q712K3 238 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-215ENST00000601150 GPR155Q7Z3F1 870 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 TMEM126BQ8IUX1 230 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 FAM20CQ8IXL6 584 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 GALNT6Q8NCL4 622 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 SMPDL3AQ92484 453 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 KIAA1143Q96AT1 154 aaPredicted RBP16.24■□□□□ 0.19
TRIM28-215ENST00000601150 RNF31Q96EP0 1072 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 LRRC4CQ9HCJ2 640 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 FAM60AQ9NP50 221 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 TXNDC16Q9P2K2 825 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 MTRF1LQ9UGC7 380 aaKnown RBP16.24■□□□□ 0.19
TRIM28-215ENST00000601150 SERTAD3Q9UJW9 196 aa16.24■□□□□ 0.19
TRIM28-215ENST00000601150 FAM95CA0A1B0GW59 222 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 A0A1W2PPV9 198 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 CXorf49A8MYA2 514 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-215ENST00000601150 EFSO43281 561 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 SCRG1O75711 98 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 PIAS1O75925 651 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 CYP2A7P20853 494 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 MAGP20916 626 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 SAT1P21673 171 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 PNLIPRP1P54315 467 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 ITGA1P56199 1179 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 SP140Q13342 867 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 FASTKQ14296 549 aaKnown RBP16.23■□□□□ 0.19
TRIM28-215ENST00000601150 ARHGAP40Q5TG30 622 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 OR1L3Q8NH93 324 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 MCOLN3Q8TDD5 553 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 SNRNP27Q8WVK2 155 aaKnown RBP16.23■□□□□ 0.19
TRIM28-215ENST00000601150 N4BP2L2Q92802 583 aaPredicted RBP16.23■□□□□ 0.19
TRIM28-215ENST00000601150 VPS39Q96JC1 886 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 CPNE1Q99829 537 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 MCMBPQ9BTE3 642 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 TSPYL1Q9H0U9 437 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 ZFHX4Q86UP3 3567 aa16.23■□□□□ 0.19
TRIM28-215ENST00000601150 SPTBP11277 2137 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 LOC101059948A0A1B0GTJ6 334 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 SLC16A5O15375 505 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 CPNE3O75131 537 aaKnown RBP16.22■□□□□ 0.19
TRIM28-215ENST00000601150 TSPAN12O95859 305 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 SLC16A8O95907 504 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 C1QAP02745 245 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 NTRK1P04629 796 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 CCNYL3P0C7X3 344 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 LIFP15018 202 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 PSMB5P28074 263 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 STX2P32856 288 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 RPA3P35244 121 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-215ENST00000601150 STAT5AP42229 794 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 PGGT1BP53609 377 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 TAS2R39P59534 338 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 KIAA1614Q5VZ46 1190 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 DNAJC22Q8N4W6 341 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 ZSCAN1Q8NBB4 408 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 OR2L3Q8NG85 312 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 OR2A1Q8NGT9 310 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 ZNF480Q8WV37 535 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 IFT81Q8WYA0 676 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 MIPEPQ99797 713 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 EFHD1Q9BUP0 239 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 SLC12A9Q9BXP2 914 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 GPN2Q9H9Y4 310 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-215ENST00000601150 ADAMTS6Q9UKP5 1117 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 PADI1Q9ULC6 663 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 PLCL2Q9UPR0 1127 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 KLHL20Q9Y2M5 609 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 PCDHB3Q9Y5E6 796 aa16.22■□□□□ 0.19
TRIM28-215ENST00000601150 TARM1B6A8C7 271 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 ZNF37AP17032 561 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-215ENST00000601150 WT1P19544 449 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-215ENST00000601150 CMPK1P30085 196 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 GP5P40197 560 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 GABRA4P48169 554 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 SLC12A2P55011 1212 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms