RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 HEXDCQ8WVB3 486 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 PMEPA1Q969W9 287 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 LINGO1Q96FE5 620 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 SCYL1Q96KG9 808 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 UBXN10Q96LJ8 280 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 GPR78Q96P69 363 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 ASPSCR1Q9BZE9 553 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 ZCCHC2Q9C0B9 1178 aaKnown RBP12.34□□□□□ -0.43
UPF1-208ENST00000600012 ZMYND15Q9H091 742 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 KCNK4Q9NYG8 393 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 ATXN10Q9UBB4 475 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 FAM8A1Q9UBU6 413 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 GRID1Q9ULK0 1009 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 TMEM98Q9Y2Y6 226 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 DHRS7Q9Y394 339 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 B3GALT1Q9Y5Z6 326 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 WDR91A4D1P6 747 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 CYSRT1A8MQ03 144 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 B4E171 279 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 CDK14O94921 469 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 AP2A2O94973 939 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 COL6A2P12110 1019 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 CD1DP15813 335 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 ZNF8P17098 575 aaPredicted RBP12.33□□□□□ -0.44
UPF1-208ENST00000600012 PBLDP30039 288 aaPredicted RBP12.33□□□□□ -0.44
UPF1-208ENST00000600012 CCR7P32248 378 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 TSPAN7P41732 249 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 FASLGP48023 281 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 PRLHRP49683 370 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 GTF2H3Q13889 308 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 LRP8Q14114 963 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 BOP1Q14137 746 aaKnown RBP12.33□□□□□ -0.44
UPF1-208ENST00000600012 TSNAXIP1Q2TAA8 658 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 PYCR3Q53H96 274 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 UGT3A1Q6NUS8 523 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 TMEM71Q6P5X7 295 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 TMEM220Q6QAJ8 160 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 CRTC3Q6UUV7 619 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 CCDC91Q7Z6B0 441 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 FAM129CQ86XR2 697 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 CACNA2D3Q8IZS8 1091 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 ZBTB2Q8N680 514 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 DYDC1Q8WWB3 177 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 INPP5DQ92835 1189 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 PANX3Q96QZ0 392 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 MECRQ9BV79 373 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 SYTL2Q9HCH5 934 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 TRIM39Q9HCM9 518 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 SLC39A1Q9NY26 324 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 XPR1Q9UBH6 696 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 IKZF3Q9UKT9 509 aa12.33□□□□□ -0.44
UPF1-208ENST00000600012 PCYT1BQ9Y5K3 369 aaPredicted RBP12.33□□□□□ -0.44
UPF1-208ENST00000600012 NPEPPSL1A6NEC2 478 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 CAPN5O15484 640 aaPredicted RBP12.32□□□□□ -0.44
UPF1-208ENST00000600012 DUX1O43812 170 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 ZBTB14O43829 449 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 VEGFDO43915 354 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 RAD1O60671 282 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 TSPAN12O95859 305 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 FTH1P02794 183 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 SBK3P0C264 359 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 DHRS4L1P0CG22 281 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 LIFP15018 202 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 TFEBP19484 476 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 SERPINB4P48594 390 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 PPM1FP49593 454 aaPredicted RBP12.32□□□□□ -0.44
UPF1-208ENST00000600012 KPNA2P52292 529 aaKnown RBP12.32□□□□□ -0.44
UPF1-208ENST00000600012 GNGT1P63211 74 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 FAM83EQ2M2I3 478 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 PLA2G4EQ3MJ16 856 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 CCDC153Q494R4 210 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 BCL7AQ4VC05 210 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 ACSBG2Q5FVE4 666 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 TECRLQ5HYJ1 363 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 DCAF12Q5T6F0 453 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 AGAP9Q5VTM2 703 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 KLC3Q6P597 504 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 OTOAQ7RTW8 1153 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 PIWIL4Q7Z3Z4 852 aaKnown RBP12.32□□□□□ -0.44
UPF1-208ENST00000600012 GALNT13Q8IUC8 556 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 TRAPPC5Q8IUR0 188 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 NKAPQ8N5F7 415 aaKnown RBP12.32□□□□□ -0.44
UPF1-208ENST00000600012 OR10G6Q8NH81 332 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 SLC37A2Q8TED4 501 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 EEF1AKMT1Q8WVE0 214 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 ELMO1Q92556 727 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 PTERQ96BW5 349 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 AHCYL2Q96HN2 611 aaKnown RBP12.32□□□□□ -0.44
UPF1-208ENST00000600012 CATSPER2Q96P56 530 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 TEFMQ96QE5 360 aaKnown RBP12.32□□□□□ -0.44
UPF1-208ENST00000600012 SLC38A3Q99624 504 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 TSSK1BQ9BXA7 367 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 CAPS2Q9BXY5 557 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 NMRAL1Q9HBL8 299 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 TMEM9Q9P0T7 183 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 CPSF2Q9P2I0 782 aaKnown RBP12.32□□□□□ -0.44
UPF1-208ENST00000600012 PDP2Q9P2J9 529 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 TUBD1Q9UJT1 453 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 ADAM21Q9UKJ8 722 aa12.32□□□□□ -0.44
UPF1-208ENST00000600012 PRKAB1Q9Y478 270 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms