RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 KLHL25Q9H0H3 589 aa15.55■□□□□ 0.08
TRIM28-213ENST00000598355 FANCEQ9HB96 536 aa15.55■□□□□ 0.08
TRIM28-213ENST00000598355 TAS2R13Q9NYV9 303 aa15.55■□□□□ 0.08
TRIM28-213ENST00000598355 ZFATQ9P243 1243 aa15.55■□□□□ 0.08
TRIM28-213ENST00000598355 TRMT6Q9UJA5 497 aaKnown RBP15.55■□□□□ 0.08
TRIM28-213ENST00000598355 SLC39A10Q9ULF5 831 aa15.55■□□□□ 0.08
TRIM28-213ENST00000598355 KALRNO60229 2985 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 TMEM150CB9EJG8 249 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 ERVH48-1M5A8F1 160 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 SCRG1O75711 98 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 MAGP20916 626 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 OAS2P29728 719 aaKnown RBP15.54■□□□□ 0.08
TRIM28-213ENST00000598355 RORAP35398 523 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 GCGRP47871 477 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 TRADDQ15628 312 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 FAM45BPQ6NSW5 357 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 C8orf74Q6P047 294 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 PIWIL4Q7Z3Z4 852 aaKnown RBP15.54■□□□□ 0.08
TRIM28-213ENST00000598355 ZC3HC1Q86WB0 502 aaKnown RBP15.54■□□□□ 0.08
TRIM28-213ENST00000598355 MMGT1Q8N4V1 131 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 DNAJC22Q8N4W6 341 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 RAB42Q8N4Z0 105 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 SLC38A9Q8NBW4 561 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 LSM14AQ8ND56 463 aaKnown RBP15.54■□□□□ 0.08
TRIM28-213ENST00000598355 OR2A1Q8NGT9 310 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 FAM45AQ8TCE6 357 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 DLG3Q92796 817 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 WBP1Q96G27 269 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 EFHD1Q9BUP0 239 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 LHX9Q9NQ69 397 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 SMYD2Q9NRG4 433 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 ZDHHC18Q9NUE0 388 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 TSR3Q9UJK0 312 aaKnown RBP15.54■□□□□ 0.08
TRIM28-213ENST00000598355 PCDHGA6Q9Y5G7 932 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 CCDC88CQ9P219 2028 aa15.54■□□□□ 0.08
TRIM28-213ENST00000598355 ATXN7O15265 892 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-213ENST00000598355 GSTA2P09210 222 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 F8A1P23610 371 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 MCM3P25205 808 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 PSMB5P28074 263 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 ITGA1P56199 1179 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 GPS2Q13227 327 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 SP140Q13342 867 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 FASTKQ14296 549 aaKnown RBP15.53■□□□□ 0.08
TRIM28-213ENST00000598355 SOWAHCQ53LP3 525 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-213ENST00000598355 HECTD2Q5U5R9 776 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 ZNF385CQ66K41 422 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-213ENST00000598355 PAQR3Q6TCH7 311 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 TAX1BP1Q86VP1 789 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 TMEM126BQ8IUX1 230 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 FAM20CQ8IXL6 584 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 LRRC56Q8IYG6 542 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-213ENST00000598355 OR2L3Q8NG85 312 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 PYROXD1Q8WU10 500 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 ZNF480Q8WV37 535 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 KIAA1143Q96AT1 154 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-213ENST00000598355 ZNF285Q96NJ3 590 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 PKP4Q99569 1192 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 OLFM1Q99784 485 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 LRRC1Q9BTT6 524 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 FAM117AQ9C073 453 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 GPN2Q9H9Y4 310 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-213ENST00000598355 SAYSD1Q9NPB0 183 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 PPANQ9NQ55 473 aaKnown RBP15.53■□□□□ 0.08
TRIM28-213ENST00000598355 NSMCE4AQ9NXX6 385 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 IL17BQ9UHF5 180 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 CROTQ9UKG9 612 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 PIEZO2Q9H5I5 2752 aa15.53■□□□□ 0.08
TRIM28-213ENST00000598355 NUP210LQ5VU65 1888 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 TLN1Q9Y490 2541 aaKnown RBP15.52■□□□□ 0.08
TRIM28-213ENST00000598355 TCRBV9S1A1TA0A576 114 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 FAM159BA6NKW6 160 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 TARM1B6A8C7 271 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 C21orf140B9A014 251 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 MAP3K7O43318 606 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 SLC16A8O95907 504 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 ITGB2P05107 769 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 SSTR1P30872 391 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 HSD17B2P37059 387 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 RGS4P49798 205 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 PLTPP55058 493 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 GPX6P59796 221 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 ILF2Q12905 390 aaKnown RBP15.52■□□□□ 0.08
TRIM28-213ENST00000598355 DEFB110Q30KQ9 67 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 PRAMEF17Q5VTA0 474 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 FCRL6Q6DN72 434 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 DSELQ8IZU8 1212 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 C2orf73Q8N5S3 287 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-213ENST00000598355 EEF1AKMT1Q8WVE0 214 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 SMPDL3AQ92484 453 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 FAM129AQ9BZQ8 928 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 RHOJQ9H4E5 214 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 AKIRIN1Q9H9L7 192 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-213ENST00000598355 PCMTD2Q9NV79 361 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 INTS7Q9NVH2 962 aaKnown RBP15.52■□□□□ 0.08
TRIM28-213ENST00000598355 PADI1Q9ULC6 663 aa15.52■□□□□ 0.08
TRIM28-213ENST00000598355 BSNQ9UPA5 3926 aa15.52■□□□□ 0.07
TRIM28-213ENST00000598355 ESYT3A0FGR9 886 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 OR2A25A4D2G3 310 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 ZNF891A8MT65 544 aaPredicted RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms