RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 GALNTL6Q49A17 601 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 TSTD2Q5T7W7 516 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 ZC3HC1Q86WB0 502 aaKnown RBP12.5□□□□□ -0.41
SCAF1-202ENST00000595242 RBMXL3Q8N7X1 1067 aaKnown RBP12.5□□□□□ -0.41
SCAF1-202ENST00000595242 GBP7Q8N8V2 638 aaPredicted RBP12.5□□□□□ -0.41
SCAF1-202ENST00000595242 CT55Q8WUE5 264 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 NUS1Q96E22 293 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 VPS39Q96JC1 886 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 ELMO2Q96JJ3 720 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 OR6C1Q96RD1 312 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 TRIB3Q96RU7 358 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 AGAP2Q99490 1192 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 LHX9Q9NQ69 397 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 IARS2Q9NSE4 1012 aaKnown RBP12.5□□□□□ -0.41
SCAF1-202ENST00000595242 IL1RAPL1Q9NZN1 696 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 UBA2Q9UBT2 640 aaPredicted RBP12.5□□□□□ -0.41
SCAF1-202ENST00000595242 LNPEPQ9UIQ6 1025 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 ITGB1BP2Q9UKP3 347 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 SLC12A4Q9UP95 1085 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 SLC17A4Q9Y2C5 497 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 USH1CQ9Y6N9 552 aa12.5□□□□□ -0.41
SCAF1-202ENST00000595242 C21orf140B9A014 251 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 EML2O95834 649 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 PROCP04070 461 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 ANKRD34CP0C6C1 535 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 TROVE2P10155 538 aaKnown RBP eCLIP12.49□□□□□ -0.41
SCAF1-202ENST00000595242 TYK2P29597 1187 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 ITGA1P56199 1179 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 SH3BP2P78314 561 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 PDE1BQ01064 536 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 NSUN2Q08J23 767 aaKnown RBP eCLIP12.49□□□□□ -0.41
SCAF1-202ENST00000595242 CCDC153Q494R4 210 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 ATG16L1Q676U5 607 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 DPPA4Q7L190 304 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 CISD2Q8N5K1 135 aaKnown RBP12.49□□□□□ -0.41
SCAF1-202ENST00000595242 C2CD4AQ8NCU7 369 aaPredicted RBP12.49□□□□□ -0.41
SCAF1-202ENST00000595242 ARMC2Q8NEN0 867 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 GABPB2Q8TAK5 448 aaPredicted RBP12.49□□□□□ -0.41
SCAF1-202ENST00000595242 CALML6Q8TD86 181 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 TUBGCP5Q96RT8 1024 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 TSSK1BQ9BXA7 367 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 MTO1Q9Y2Z2 717 aaKnown RBP12.49□□□□□ -0.41
SCAF1-202ENST00000595242 SPTBP11277 2137 aa12.49□□□□□ -0.41
SCAF1-202ENST00000595242 MN1Q10571 1320 aaPredicted RBP12.48□□□□□ -0.41
SCAF1-202ENST00000595242 SNNO75324 88 aaPredicted RBP12.48□□□□□ -0.41
SCAF1-202ENST00000595242 CEACAM4O75871 244 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 NDST3O95803 873 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 COL6A2P12110 1019 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 BGNP21810 368 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 GABRB3P28472 473 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 SERPINA4P29622 427 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 EPHA4P54764 986 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 RPS18P62269 152 aaKnown RBP12.48□□□□□ -0.41
SCAF1-202ENST00000595242 POLR2LP62875 67 aaKnown RBP12.48□□□□□ -0.41
SCAF1-202ENST00000595242 OCRLQ01968 901 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 ACTN3Q08043 901 aaPredicted RBP12.48□□□□□ -0.41
SCAF1-202ENST00000595242 ITKQ08881 620 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 PCSK7Q16549 785 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 PLEKHN1Q494U1 663 aaPredicted RBP12.48□□□□□ -0.41
SCAF1-202ENST00000595242 RALGPS1Q5JS13 557 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 SIRPB2Q5JXA9 342 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 DOK6Q6PKX4 331 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 HPS6Q86YV9 775 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 PLXDC1Q8IUK5 500 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 PAF1Q8N7H5 531 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 CCDC63Q8NA47 563 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 FDCSPQ8NFU4 85 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 SH3KBP1Q96B97 665 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 COQ10AQ96MF6 247 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 OR2M4Q96R27 311 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 NUDCD1Q96RS6 583 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 CINPQ9BW66 212 aaPredicted RBP12.48□□□□□ -0.41
SCAF1-202ENST00000595242 ATP13A3Q9H7F0 1226 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 SARS2Q9NP81 518 aaKnown RBP12.48□□□□□ -0.41
SCAF1-202ENST00000595242 ABCF3Q9NUQ8 709 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 SLC2A6Q9UGQ3 507 aa12.48□□□□□ -0.41
SCAF1-202ENST00000595242 WDR91A4D1P6 747 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 PRSS44E7EML9 344 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 LDB2O43679 373 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 DCTN3O75935 186 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 DNAJC8O75937 253 aaPredicted RBP12.47□□□□□ -0.41
SCAF1-202ENST00000595242 VAPBO95292 243 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 APOA4P06727 396 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 PTPN4P29074 926 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 SLC1A2P43004 574 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 SEPHS1P49903 392 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 IL10RAQ13651 578 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 PCLAFQ15004 111 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 ZRSR2Q15696 482 aaKnown RBP12.47□□□□□ -0.41
SCAF1-202ENST00000595242 CNGA3Q16281 694 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 SPRED3Q2MJR0 410 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 RNF187Q5TA31 235 aaPredicted RBP12.47□□□□□ -0.41
SCAF1-202ENST00000595242 CMC1Q7Z7K0 106 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 SYVN1Q86TM6 617 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.47□□□□□ -0.41
SCAF1-202ENST00000595242 SLC25A41Q8N5S1 370 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 OR13J1Q8NGT2 312 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 OR6Y1Q8NGX8 325 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 RDH11Q8TC12 318 aa12.47□□□□□ -0.41
SCAF1-202ENST00000595242 ECHDC3Q96DC8 303 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms