RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	RNF32	Q9H0A6	362 aa		11.21	□□□□□ -0.61
CLK3-222	ENST00000568232	FAM96A	Q9H5X1	160 aa		11.21	□□□□□ -0.61
CLK3-222	ENST00000568232	KLHL1	Q9NR64	748 aa		11.21	□□□□□ -0.61
CLK3-222	ENST00000568232	COQ3	Q9NZJ6	369 aa		11.21	□□□□□ -0.61
CLK3-222	ENST00000568232	STOX2	Q9P2F5	926 aa	Predicted RBP	11.21	□□□□□ -0.61
CLK3-222	ENST00000568232	ST6GALNAC2	Q9UJ37	374 aa		11.21	□□□□□ -0.61
CLK3-222	ENST00000568232	ANAPC7	Q9UJX3	599 aa		11.21	□□□□□ -0.61
CLK3-222	ENST00000568232	TDRKH	Q9Y2W6	561 aa	Known RBP	11.21	□□□□□ -0.61
CLK3-222	ENST00000568232	ARL5A	Q9Y689	179 aa		11.21	□□□□□ -0.61
CLK3-222	ENST00000568232	IGHV1-45	A0A0A0MS14	117 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	LGALS16	A8MUM7	142 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	FOXO6	A8MYZ6	492 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	FFAR3	O14843	346 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	STX7	O15400	261 aa	Known RBP	11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	GPR42	O15529	346 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	ASNA1	O43681	348 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	SRP72	O76094	671 aa	Known RBP	11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	ZRANB2	O95218	330 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	ZWINT	O95229	277 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	MYBL1	P10243	752 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	MYBL2	P10244	700 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	CDK11B	P21127	795 aa	Known RBP	11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	OCA2	Q04671	838 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	MYBPH	Q13203	477 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	SLC14A2	Q15849	920 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	ABHD17B	Q5VST6	288 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	E4F1	Q66K89	784 aa	Predicted RBP	11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	KDELC1	Q6UW63	502 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	NPNT	Q6UXI9	565 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	FGD2	Q7Z6J4	655 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	BIVM	Q86UB2	503 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	MARVELD2	Q8N4S9	558 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	TAB3	Q8N5C8	712 aa	Predicted RBP	11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	PLD5	Q8N7P1	536 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	DENND1A	Q8TEH3	1009 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	DCUN1D1	Q96GG9	259 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	ZNF830	Q96NB3	372 aa	Predicted RBP	11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	SIGLEC12	Q96PQ1	595 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	TRIM51	Q9BSJ1	452 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	ISCU	Q9H1K1	167 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	ZNF304	Q9HCX3	659 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	ZNF358	Q9NW07	568 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	DNAJB12	Q9NXW2	375 aa	Known RBP	11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	IP6K2	Q9UHH9	426 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	FKBPL	Q9UIM3	349 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232	PLEKHA6	Q9Y2H5	1048 aa		11.2	□□□□□ -0.62
CLK3-222	ENST00000568232		A0A0A6YYK5	440 aa	Predicted RBP	11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	LRRC53	A6NM62	1247 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	TTI1	O43156	1089 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	PROM1	O43490	865 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	TOX	O94900	526 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	ATP1B2	P14415	290 aa	Predicted RBP	11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	MSX1	P28360	303 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	CD68	P34810	354 aa	Predicted RBP	11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	TAS2R40	P59535	323 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	GRM7	Q14831	915 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	PDK2	Q15119	407 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	HADH	Q16836	314 aa	Known RBP	11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	FCRLB	Q6BAA4	426 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	RIPOR1	Q6ZS17	1223 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	CXXC5	Q7LFL8	322 aa	Known RBP	11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	SIAH3	Q8IW03	269 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	C2orf73	Q8N5S3	287 aa	Predicted RBP	11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	SPATA3	Q8NHX4	192 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	ENOX1	Q8TC92	643 aa	Known RBP	11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	ARSG	Q96EG1	525 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	TRIM11	Q96F44	468 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	MRGPRX2	Q96LB1	330 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	RNF157	Q96PX1	679 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	ERGIC2	Q96RQ1	377 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	THAP2	Q9H0W7	228 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	ANKRD10	Q9NXR5	420 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	ZNF282	Q9UDV7	671 aa	Predicted RBP	11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	KCNN3	Q9UGI6	736 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	FAM153A	Q9UHL3	310 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	ASF1A	Q9Y294	204 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	ASB1	Q9Y576	335 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	HRH3	Q9Y5N1	445 aa		11.19	□□□□□ -0.62
CLK3-222	ENST00000568232	JMJD1C	Q15652	2540 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	HRNR	Q86YZ3	2850 aa	Predicted RBP	11.18	□□□□□ -0.62
CLK3-222	ENST00000568232		A8MUI8	341 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	IDS	B3KWA1	339 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	PRRG2	O14669	202 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	TSPAN12	O95859	305 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	HOXD4	P09016	255 aa	Predicted RBP	11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	RALB	P11234	206 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	SKIL	P12757	684 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	NFKB1	P19838	968 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	CXCR2	P25025	360 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	PTPN3	P26045	913 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	MEOX1	P50221	254 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	EMP2	P54851	167 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	XIAP	P98170	497 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	BRD3	Q15059	726 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	PCOLCE	Q15113	449 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	SLC1A5	Q15758	541 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	TEX44	Q53QW1	395 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	MAP7D3	Q8IWC1	876 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	BEST3	Q8N1M1	668 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	TTC29	Q8NA56	475 aa	Predicted RBP	11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms