RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PDHA2P29803 388 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 CYP4F3Q08477 520 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 FAM109BQ6ICB4 259 aaPredicted RBP19.71■□□□□ 0.75
CLN3-230ENST00000568076 TMEM220Q6QAJ8 160 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 SPRED1Q7Z699 444 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 TBC1D21Q8IYX1 336 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 SLC22A15Q8IZD6 547 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 MFSD2AQ8NA29 543 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 OR10A6Q8NH74 314 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 TMEM159Q96B96 161 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 TSSK3Q96PN8 268 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 PRPF18Q99633 342 aaKnown RBP19.71■□□□□ 0.75
CLN3-230ENST00000568076 SERHLQ9NQF3 203 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 GULP1Q9UBP9 304 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.71■□□□□ 0.75
CLN3-230ENST00000568076 PPT2Q9UMR5 302 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 C5orf42Q9H799 3197 aa19.71■□□□□ 0.75
CLN3-230ENST00000568076 SERTM1A2A2V5 107 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 PSMD11O00231 422 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 PLK4O00444 970 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 B3GALT4O96024 378 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 PRNPP04156 253 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 TFAP2AP05549 437 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 PRPS2P11908 318 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 AMD1P17707 334 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 BDKRB1P46663 353 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 PLOD1Q02809 727 aaPredicted RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 KCNC3Q14003 757 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 ZNF658BQ4V348 819 aaPredicted RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 RUNDC3AQ59EK9 446 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 SATL1Q86VE3 508 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 NLRP8Q86W28 1048 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 THOC6Q86W42 341 aaKnown RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 RIMKLAQ8IXN7 391 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 ZNF548Q8NEK5 533 aaPredicted RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 BPIFB1Q8TDL5 484 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 TFAP2CQ92754 450 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 CCDC115Q96NT0 180 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 THUMPD3Q9BV44 507 aaKnown RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 CHID1Q9BWS9 393 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 ANKRD60Q9BZ19 345 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 PAIP1Q9H074 479 aaKnown RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 STOX2Q9P2F5 926 aaPredicted RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 DPP7Q9UHL4 492 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 K7ESM1 405 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 NPC1O15118 1278 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 CA3P07451 260 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 PABPC4LP0CB38 370 aaKnown RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 MAP4P27816 1152 aaKnown RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 PBLDP30039 288 aaPredicted RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 CLCN2P51788 898 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 IRF8Q02556 426 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 FNDC3BQ53EP0 1204 aaKnown RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 NAIF1Q69YI7 327 aaPredicted RBP19.7■□□□□ 0.74
CLN3-230ENST00000568076 AGTRAPQ6RW13 159 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 TRIM74Q86UV6 250 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 NPAS3Q8IXF0 933 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 OR2T12Q8NG77 320 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 EGLN2Q96KS0 407 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 APOLD1Q96LR9 279 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 OR4K3Q96R72 315 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 C9orf16Q9BUW7 83 aa19.7■□□□□ 0.74
CLN3-230ENST00000568076 E7EQ34 232 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 H0Y858 1186 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 ANXA6P08133 673 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 CDH1P12830 882 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 ITGB7P26010 798 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 NAE1Q13564 534 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 HNRNPA1L2Q32P51 320 aaKnown RBP19.69■□□□□ 0.74
CLN3-230ENST00000568076 LIPJQ5W064 366 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 WDR20Q8TBZ3 569 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 CCDC138Q96M89 665 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 RNF145Q96MT1 663 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 ASB16Q96NS5 453 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 TSC22D3Q99576 134 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 TMED5Q9Y3A6 229 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 PCDHB14Q9Y5E9 798 aa19.69■□□□□ 0.74
CLN3-230ENST00000568076 MUC22E2RYF6 1773 aaPredicted RBP19.69■□□□□ 0.74
CLN3-230ENST00000568076 TCF20Q9UGU0 1960 aaKnown RBP19.69■□□□□ 0.74
CLN3-230ENST00000568076 KIF1CO43896 1103 aaKnown RBP19.68■□□□□ 0.74
CLN3-230ENST00000568076 RASAL1O95294 804 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 CLPTM1O96005 669 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 HOXB9P17482 250 aaPredicted RBP19.68■□□□□ 0.74
CLN3-230ENST00000568076 NELFEP18615 380 aaKnown RBP19.68■□□□□ 0.74
CLN3-230ENST00000568076 IMPA1P29218 277 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 PEX19P40855 299 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 APOFQ13790 326 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 XKR6Q5GH73 641 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 PHACTR4Q8IZ21 702 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 METTL25Q8N6Q8 603 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 KIAA1958Q8N8K9 716 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 TMIEQ8NEW7 156 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 HHIPQ96QV1 700 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 PKP4Q99569 1192 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 CARS2Q9HA77 564 aaKnown RBP19.68■□□□□ 0.74
CLN3-230ENST00000568076 HPS4Q9NQG7 708 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 MAN2B2Q9Y2E5 1009 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 RNF103-CHMP3A0A140T963 221 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 ANTXRLA6NF34 631 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 CLGNO14967 610 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms