RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 RPS3P23396 243 aaKnown RBP eCLIP15.43■□□□□ 0.064e-6■■□□□ 12.9
CLN3-229ENST00000567963 VARSP26640 1264 aaKnown RBP15.43■□□□□ 0.06
CLN3-229ENST00000567963 NMBRP28336 390 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 SOX8P57073 446 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 BASP1P80723 227 aaKnown RBP15.43■□□□□ 0.06
CLN3-229ENST00000567963 MYBPC3Q14896 1274 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 PLEKHN1Q494U1 663 aaPredicted RBP15.43■□□□□ 0.06
CLN3-229ENST00000567963 ZC3H12BQ5HYM0 836 aaKnown RBP15.43■□□□□ 0.06
CLN3-229ENST00000567963 IGFL3Q6UXB1 125 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 PPP1R32Q7Z5V6 425 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 LRRC6Q86X45 466 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 MPP5Q8N3R9 675 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 GSDMBQ8TAX9 411 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 ZUFSPQ96AP4 578 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 RAD51AP1Q96B01 352 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 NACC2Q96BF6 587 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 RAB11FIP5Q9BXF6 653 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 ENAMQ9NRM1 1142 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 BFARQ9NZS9 450 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 TTC7AQ9ULT0 858 aaPredicted RBP15.43■□□□□ 0.06
CLN3-229ENST00000567963 ZKSCAN5Q9Y2L8 839 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 ESPL1Q14674 2120 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 A0A1B0GX78 115 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 TARM1B6A8C7 271 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 AGPSO00116 658 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 MASP2O00187 686 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 KLHL41O60662 606 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 NDUFS3O75489 264 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 FKBP9O95302 570 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 C1orf105O95561 183 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 TCTE1Q5JU00 501 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 GSTA5Q7RTV2 222 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 OTOAQ7RTW8 1153 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 OVCH1Q7RTY7 1134 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 FKBP10Q96AY3 582 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 B3GNT3Q9Y2A9 372 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 MRFAP1Q9Y605 127 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 NFS1Q9Y697 457 aa15.42■□□□□ 0.06
CLN3-229ENST00000567963 GOLGA6L6A8MZA4 724 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 DSCR3O14972 297 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 ALBP02768 609 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 ALPPP05187 535 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 PIM1P11309 404 aaPredicted RBP15.41■□□□□ 0.06
CLN3-229ENST00000567963 MMP11P24347 488 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 MCM3P25205 808 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 ARNTP27540 789 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 KCNJ1P48048 391 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 GRM7Q14831 915 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 CYP2A13Q16696 494 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 CCSMST1Q4G0I0 132 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 CTSL3PQ5NE16 218 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 YOD1Q5VVQ6 348 aaPredicted RBP15.41■□□□□ 0.06
CLN3-229ENST00000567963 HMGCLL1Q8TB92 370 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 SKA2Q8WVK7 121 aaPredicted RBP15.41■□□□□ 0.06
CLN3-229ENST00000567963 SNRNP40Q96DI7 357 aaKnown RBP15.41■□□□□ 0.06
CLN3-229ENST00000567963 MFSD3Q96ES6 412 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 ZNF285Q96NJ3 590 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 BIRC8Q96P09 236 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 KIFC1Q9BW19 673 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 WDR54Q9H977 334 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 ATP13A2Q9NQ11 1180 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 CUTCQ9NTM9 273 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 MAP10Q9P2G4 905 aa15.41■□□□□ 0.06
CLN3-229ENST00000567963 FITM1A5D6W6 292 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 SRPX2O60687 465 aaPredicted RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 CTSVO60911 334 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 SEMA7AO75326 666 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 IPO13O94829 963 aaKnown RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 VAPBO95292 243 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 FGGP02679 453 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 MGAT1P26572 445 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 EIF3BP55884 814 aaKnown RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 MRPL49Q13405 166 aaKnown RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 NKG7Q16617 165 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 EIF2S3LQ2VIR3 472 aaKnown RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 LRRC8BQ6P9F7 803 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 CES3Q6UWW8 571 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 SDCCAG8Q86SQ7 713 aaPredicted RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 IQCKQ8N0W5 287 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 RAB42Q8N4Z0 105 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 MAIP1Q8WWC4 291 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 C19orf60Q96EN9 201 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 FOPNLQ96NB1 174 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 SELENOSQ9BQE4 189 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 SLC29A3Q9BZD2 475 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 SLC26A1Q9H2B4 701 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 MRM3Q9HC36 420 aaKnown RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 LZTFL1Q9NQ48 299 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 SYBUQ9NX95 663 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 RUVBL2Q9Y230 463 aaKnown RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 KLK4Q9Y5K2 254 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 NUP210LQ5VU65 1888 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 PCM1Q15154 2024 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 KRT87PA6NCN2 255 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 PSMB5P28074 263 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 CCNFP41002 786 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 BDKRB1P46663 353 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 CDK16Q00536 496 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 AIMP2Q13155 320 aaKnown RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 FAM214AQ32MH5 1076 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms