RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TRIM44Q96DX7 344 aaPredicted RBP12.92□□□□□ -0.34
CLK3-216ENST00000564468 PWWP2AQ96N64 755 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 LRFN5Q96NI6 719 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 CATSPER2Q96P56 530 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 NRTNQ99748 197 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 DPH5Q9H2P9 285 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 LHX9Q9NQ69 397 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 NSMCE4AQ9NXX6 385 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 CCDC88CQ9P219 2028 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 ZFATQ9P243 1243 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 GALPQ9UBC7 116 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 AP1M2Q9Y6Q5 423 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 TARM1B6A8C7 271 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 E7EQ34 232 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 TIAF1O95411 115 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 AHSGP02765 367 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 NTRK1P04629 796 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 PEBP1P30086 187 aaKnown RBP12.91□□□□□ -0.34
CLK3-216ENST00000564468 CYP2A13Q16696 494 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 WHAMMP3Q1A5X7 153 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 CRTC2Q53ET0 693 aaPredicted RBP12.91□□□□□ -0.34
CLK3-216ENST00000564468 ZC3H12BQ5HYM0 836 aaKnown RBP12.91□□□□□ -0.34
CLK3-216ENST00000564468 KIAA1614Q5VZ46 1190 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 DUPD1Q68J44 220 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 CDHR3Q6ZTQ4 885 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 TRIM73Q86UV7 250 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 PALM2Q8IXS6 379 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 ZBED8Q8IZ13 594 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 LMNTD1Q8N9Z9 388 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 FLVCR1-AS1Q8TAF5 88 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 CD200R1Q8TD46 325 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 ASB11Q8WXH4 323 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 SEC14L1Q92503 715 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 ZUFSPQ96AP4 578 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 CLIP3Q96DZ5 547 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 IL17FQ96PD4 163 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 ARHGAP9Q9BRR9 750 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 SLC12A9Q9BXP2 914 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 PHACTR1Q9C0D0 580 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 KLHL25Q9H0H3 589 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 TSR3Q9UJK0 312 aaKnown RBP12.91□□□□□ -0.34
CLK3-216ENST00000564468 CROTQ9UKG9 612 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 PLCL2Q9UPR0 1127 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 RUVBL2Q9Y230 463 aaKnown RBP12.91□□□□□ -0.34
CLK3-216ENST00000564468 MED16Q9Y2X0 877 aa12.91□□□□□ -0.34
CLK3-216ENST00000564468 FER1L5A0AVI2 2057 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 ARHGEF33A8MVX0 844 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 MYO1CO00159 1063 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 TP73O15350 636 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 RECKO95980 971 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 TCN2P20062 427 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 RPS15P62841 145 aaKnown RBP12.9□□□□□ -0.34
CLK3-216ENST00000564468 DNASE1L3Q13609 305 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 CUL1Q13616 776 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 FAM45BPQ6NSW5 357 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 C8orf74Q6P047 294 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 TLDC1Q6P9B6 456 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 PCSK4Q6UW60 755 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 TAX1BP1Q86VP1 789 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 SLC26A11Q86WA9 606 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 CPNE9Q8IYJ1 553 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 MYO1HQ8N1T3 1032 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 C2orf73Q8N5S3 287 aaPredicted RBP12.9□□□□□ -0.34
CLK3-216ENST00000564468 MNS1Q8NEH6 495 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 OR1L3Q8NH93 324 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 GIMAP7Q8NHV1 300 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 FAM45AQ8TCE6 357 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 DENND1AQ8TEH3 1009 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 SMPDL3AQ92484 453 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 STARD8Q92502 1023 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 ZNF592Q92610 1267 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 TTC9Q92623 222 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 CDKL2Q92772 493 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 NDNQ99608 321 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 SLC30A3Q99726 388 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 DPH2Q9BQC3 489 aaPredicted RBP12.9□□□□□ -0.34
CLK3-216ENST00000564468 GPR87Q9BY21 358 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 ACTR5Q9H9F9 607 aaPredicted RBP12.9□□□□□ -0.34
CLK3-216ENST00000564468 UTP6Q9NYH9 597 aaKnown RBP12.9□□□□□ -0.34
CLK3-216ENST00000564468 CIDEBQ9UHD4 219 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 PCDHGA6Q9Y5G7 932 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 PIEZO2Q9H5I5 2752 aa12.9□□□□□ -0.34
CLK3-216ENST00000564468 PABPN1LA6NDY0 278 aaKnown RBP12.89□□□□□ -0.35
CLK3-216ENST00000564468 GFYI3L273 518 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 MEN1O00255 615 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 PRICKLE3O43900 615 aaPredicted RBP12.89□□□□□ -0.35
CLK3-216ENST00000564468 KATNA1O75449 491 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 OR2B3O76000 313 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 CCNDBP1O95273 360 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 C8GP07360 202 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 F7P08709 466 aaPredicted RBP12.89□□□□□ -0.35
CLK3-216ENST00000564468 GSTA2P09210 222 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 ERGP11308 486 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 SFTPCP11686 197 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 WT1P19544 449 aaPredicted RBP12.89□□□□□ -0.35
CLK3-216ENST00000564468 MAGP20916 626 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 AGXTP21549 392 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 MCM3P25205 808 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 GABRB3P28472 473 aa12.89□□□□□ -0.35
CLK3-216ENST00000564468 CMPK1P30085 196 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms