RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 FTH1P02794 183 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 CASP2P42575 452 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 OR4D2P58180 307 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 SLC35A2P78381 396 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 NFYCQ13952 458 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 PSMD5Q16401 504 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 SMN1Q16637 294 aaKnown RBP12.99□□□□□ -0.33
CLK3-206ENST00000562078 FAM83EQ2M2I3 478 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 BTBD16Q32M84 506 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 PLEKHG6Q3KR16 790 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 MANEALQ5VSG8 457 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 AGAP9Q5VTM2 703 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 PLEKHM3Q6ZWE6 761 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 ZC3HC1Q86WB0 502 aaKnown RBP12.99□□□□□ -0.33
CLK3-206ENST00000562078 TTLQ8NG68 377 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 ACOX2Q99424 681 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 AKTIPQ9H8T0 292 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 MPP6Q9NZW5 540 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 CLDN24A6NM45 220 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 E5RI56 91 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 LOC110117498-PIK3R3F6TDL0 507 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 I3L521 148 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 UBFD1O14562 309 aaKnown RBP12.98□□□□□ -0.33
CLK3-206ENST00000562078 FGF10O15520 208 aaPredicted RBP12.98□□□□□ -0.33
CLK3-206ENST00000562078 CYP7B1O75881 506 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 TP53P04637 393 aaPredicted RBP12.98□□□□□ -0.33
CLK3-206ENST00000562078 CYBBP04839 570 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 TPH1P17752 444 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 FADDQ13158 208 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 CTXN3Q4LDR2 81 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 SPANXN2Q5MJ10 180 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 CLVS2Q5SYC1 327 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 FAM171A1Q5VUB5 890 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 SULT1C3Q6IMI6 304 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 FAM86B1Q8N7N1 296 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 ZNF557Q8N988 423 aaPredicted RBP12.98□□□□□ -0.33
CLK3-206ENST00000562078 ATAD1Q8NBU5 361 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 GALNT11Q8NCW6 608 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 PJA1Q8NG27 643 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 SPATA22Q8NHS9 363 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 HERVK_113Q902F9 699 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 MARC2Q969Z3 335 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 ERVMER34-1Q9H9K5 563 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 SNX7Q9UNH6 387 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 MAN2B2Q9Y2E5 1009 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 KLHL20Q9Y2M5 609 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 ACOT9Q9Y305 439 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 HS3ST4Q9Y661 456 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 E9PAM4 449 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 PLD2O14939 933 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 ARHGEF9O43307 516 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 SNX4O95219 450 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 TIMP1P01033 207 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 GADD45AP24522 165 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 HOXC13P31276 330 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 TALDO1P37837 337 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 MFSD13AQ14CX5 517 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 ARTNQ5T4W7 220 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 CCNJQ5T5M9 372 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 SPESP1Q6UW49 350 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 TMEM135Q86UB9 458 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 TRIM48Q8IWZ4 208 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 AMER2Q8N7J2 671 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 OR10Z1Q8NGY1 313 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 MARVELD3Q96A59 401 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 MSANTD3Q96H12 275 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 FUBP3Q96I24 572 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLK3-206ENST00000562078 SERPINB11Q96P15 392 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 TRNT1Q96Q11 434 aaKnown RBP12.98□□□□□ -0.33
CLK3-206ENST00000562078 SLC39A8Q9C0K1 460 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 CATSPERBQ9H7T0 1116 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 CARS2Q9HA77 564 aaKnown RBP12.98□□□□□ -0.33
CLK3-206ENST00000562078 SCPEP1Q9HB40 452 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 SLC23A1Q9UHI7 598 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 UTS2RQ9UKP6 389 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 MKLN1Q9UL63 735 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 SCML2Q9UQR0 700 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 PCDHB5Q9Y5E4 795 aa12.98□□□□□ -0.33
CLK3-206ENST00000562078 LTBP2Q14767 1821 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 CIB4A0PJX0 185 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 CSF2RAP15509 400 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 DDCP20711 480 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 ERP29P30040 261 aaKnown RBP12.97□□□□□ -0.33
CLK3-206ENST00000562078 UGT2B10P36537 528 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 CBX5P45973 191 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 ATP4BP51164 291 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 GRB7Q14451 532 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 PTCHD3Q3KNS1 767 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 PRSS36Q5K4E3 855 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 ZNF767PQ75MW2 155 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 CDH24Q86UP0 819 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 MFSD6LQ8IWD5 586 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 ZNF540Q8NDQ6 660 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 UBASH3BQ8TF42 649 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 ZNF566Q969W8 418 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 TRIM43Q96BQ3 446 aaPredicted RBP12.97□□□□□ -0.33
CLK3-206ENST00000562078 PHF21BQ96EK2 531 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 C19orf60Q96EN9 201 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 NSMCE2Q96MF7 247 aa12.97□□□□□ -0.33
CLK3-206ENST00000562078 RDH12Q96NR8 316 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms