RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GDF5P43026 501 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 CDKL1Q00532 357 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 NAE1Q13564 534 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 ARHGAP19Q14CB8 494 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 IRGCQ6NXR0 463 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 WDR74Q6RFH5 385 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-227ENST00000557269 CROCCP2Q86T23 111 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 OOSP2Q86WS3 158 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 SYTL1Q8IYJ3 562 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 CNPY4Q8N129 248 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 PYCR2Q96C36 320 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 APOPT1Q96IL0 206 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 EGFL8Q99944 293 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 MRPL57Q9BQC6 102 aaKnown RBP12.39□□□□□ -0.43
SHMT2-227ENST00000557269 TMEM79Q9BSE2 394 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 RAB33BQ9H082 229 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 EPB41L1Q9H4G0 881 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 ABCF3Q9NUQ8 709 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 CD274Q9NZQ7 290 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 KLHL3Q9UH77 587 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 PTBP2Q9UKA9 531 aaKnown RBP12.39□□□□□ -0.43
SHMT2-227ENST00000557269 SH2B3Q9UQQ2 575 aa12.39□□□□□ -0.43
SHMT2-227ENST00000557269 APOBEC2Q9Y235 224 aaKnown RBP12.39□□□□□ -0.43
SHMT2-227ENST00000557269 SPEGQ15772 3267 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 IGHV5-10-1A0A0J9YXX1 117 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 LRRC14BA6NHZ5 514 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 A8MU76 341 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 C2orf74A8MZ97 194 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 ISM1B1AKI9 464 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 AGRPO00253 132 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 ZW10O43264 779 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 TYROBPO43914 113 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 KLK8O60259 260 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 KDM1AO60341 852 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 PRAMEF10O60809 474 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 GLRA3O75311 464 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 PROCP04070 461 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 ANXA5P08758 320 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 RBP1P09455 135 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 PVRP15151 417 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 PRDX3P30048 256 aaKnown RBP12.38□□□□□ -0.43
SHMT2-227ENST00000557269 HSD17B2P37059 387 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 AGTR2P50052 363 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 TBPL1P62380 186 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 TSTA3Q13630 321 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-227ENST00000557269 SPIDRQ14159 915 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 MPP2Q14168 576 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 PTCHD3Q3KNS1 767 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 SNAP47Q5SQN1 464 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 ARMC6Q6NXE6 501 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 TMEM71Q6P5X7 295 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 KLHL35Q6PF15 583 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 LCA5Q86VQ0 697 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 SLITRK4Q8IW52 837 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 PDPRQ8NCN5 879 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 OR4D9Q8NGE8 314 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 OR2A1Q8NGT9 310 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 OR56A3Q8NH54 315 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 SMPDL3AQ92484 453 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 ALKBH8Q96BT7 664 aaKnown RBP12.38□□□□□ -0.43
SHMT2-227ENST00000557269 TLCD1Q96CP7 247 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 MED8Q96G25 268 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 TSNARE1Q96NA8 513 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 OR4K3Q96R72 315 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 SMC6Q96SB8 1091 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 RUFY1Q96T51 708 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 MAP3K3Q99759 626 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 SH3GL2Q99962 352 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 ACAT2Q9BWD1 397 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 SGPP1Q9BX95 441 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 RAB11FIP5Q9BXF6 653 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 KLHL25Q9H0H3 589 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 MRPL46Q9H2W6 279 aaKnown RBP12.38□□□□□ -0.43
SHMT2-227ENST00000557269 INTS7Q9NVH2 962 aaKnown RBP12.38□□□□□ -0.43
SHMT2-227ENST00000557269 MKS1Q9NXB0 559 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 NUDT4Q9NZJ9 180 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 PDP2Q9P2J9 529 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 SLC17A7Q9P2U7 560 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 EPHA6Q9UF33 1036 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 POMT2Q9UKY4 750 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 KLHL20Q9Y2M5 609 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 PIEZO1Q92508 2521 aa12.38□□□□□ -0.43
SHMT2-227ENST00000557269 MN1Q10571 1320 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-227ENST00000557269 IGHV5-51A0A0C4DH38 117 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 CCDC189A1A4V9 331 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 SYCE1LA8MT33 242 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 G3V2L1 256 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 DLX3O60479 287 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 PLIN3O60664 434 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 MT-CO3P00414 261 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 OAS2P29728 719 aaKnown RBP12.37□□□□□ -0.43
SHMT2-227ENST00000557269 RPA3P35244 121 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-227ENST00000557269 GGT5P36269 586 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 SLC6A12P48065 614 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 CCT5P48643 541 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 HSPA7P48741 367 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 ZFP36L1Q07352 338 aaKnown RBP12.37□□□□□ -0.43
SHMT2-227ENST00000557269 PRKAA1Q13131 559 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 PUM1Q14671 1186 aaKnown RBP eCLIP12.37□□□□□ -0.43
SHMT2-227ENST00000557269 KIR2DS3Q14952 304 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms