RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CETPP11597 493 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 PSMA3P25788 255 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 OAS2P29728 719 aaKnown RBP3.82□□□□□ -1.8
VPS29-205ENST00000548539 ATP5DP30049 168 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 NAGLUP54802 743 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 B3GALT5-AS1P59052 145 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 SLMAPQ14BN4 828 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 CTU2Q2VPK5 515 aaKnown RBP3.82□□□□□ -1.8
VPS29-205ENST00000548539 UGT3A2Q3SY77 523 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 LACTB2Q53H82 288 aaPredicted RBP3.82□□□□□ -1.8
VPS29-205ENST00000548539 DCAF10Q5QP82 559 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 SPSB3Q6PJ21 355 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 CCDC91Q7Z6B0 441 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 ZNF554Q86TJ5 538 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 ZNF329Q86UD4 541 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 HOOK3Q86VS8 718 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 MMD2Q8IY49 270 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 NAGSQ8N159 534 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 NUP93Q8N1F7 819 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 ZNF843Q8N446 348 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 TMCO5AQ8N6Q1 288 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 BMPERQ8N8U9 685 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 LMNTD1Q8N9Z9 388 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 NHLRC2Q8NBF2 726 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 DMBX1Q8NFW5 382 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 GRHL3Q8TE85 626 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 PIGBQ92521 554 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 ZNF354BQ96LW1 612 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 FAM20AQ96MK3 541 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 MMADHCQ9H3L0 296 aaPredicted RBP3.82□□□□□ -1.8
VPS29-205ENST00000548539 TFB2MQ9H5Q4 396 aaKnown RBP3.82□□□□□ -1.8
VPS29-205ENST00000548539 MINDY3Q9H8M7 445 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 RAB9BQ9NP90 201 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 CWC25Q9NXE8 425 aaPredicted RBP3.82□□□□□ -1.8
VPS29-205ENST00000548539 SEPT10Q9P0V9 454 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 RIPK3Q9Y572 518 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 OBSCNQ5VST9 7968 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 A0A1W2PPW3 197 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 PI4K2BG5E9Z4 385 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 PLOD2O00469 737 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 PSMD14O00487 310 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 LINC01565O15544 149 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 XPNPEP2O43895 674 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 SIX3O95343 332 aaPredicted RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 INHBAP08476 426 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 FGF3P11487 239 aaPredicted RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 IRF2P14316 349 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 EPCAMP16422 314 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 SP100P23497 879 aaPredicted RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 CD27P26842 260 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 PSMB4P28070 264 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 KRT2P35908 639 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 HOXA1P49639 335 aaPredicted RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 MTCP1P56278 107 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 DLK1P80370 383 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 UGCGQ16739 394 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 ZNF674Q2M3X9 581 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 ITPRIPL2Q3MIP1 535 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 MSANTD1Q6ZTZ1 278 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 FOXL2NBQ6ZUU3 175 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 RTN4RL2Q86UN3 420 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 PLD3Q8IV08 490 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 SYCP3Q8IZU3 236 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 CIARTQ8N365 385 aaPredicted RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 ZNF713Q8N859 430 aaPredicted RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 UXS1Q8NBZ7 420 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 OR4K1Q8NGD4 311 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 C9orf43Q8TAL5 461 aaPredicted RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 RAD54LQ92698 747 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 ALG14Q96F25 216 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 SLC47A1Q96FL8 570 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 ERO1AQ96HE7 468 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 ST6GAL2Q96JF0 529 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 FAM71F1Q96KD3 344 aaPredicted RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 PKP4Q99569 1192 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 CCDC3Q9BQI4 270 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 URM1Q9BTM9 101 aaKnown RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 C2orf40Q9H1Z8 148 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 SNX25Q9H3E2 840 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 ZNF701Q9NV72 531 aaPredicted RBP3.81□□□□□ -1.8
VPS29-205ENST00000548539 DONSONQ9NYP3 566 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 ERAP1Q9NZ08 941 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 TXNDC16Q9P2K2 825 aa3.81□□□□□ -1.8
VPS29-205ENST00000548539 DENND3A2RUS2 1198 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 ANKRD61A6NGH8 418 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 DUXAA6NLW8 204 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 PPIP5K2O43314 1243 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 BUB3O43684 328 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 SELENOFO60613 162 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 RNASEH1O60930 286 aaKnown RBP3.8□□□□□ -1.8
VPS29-205ENST00000548539 RPS6KA5O75582 802 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 PGLSO95336 258 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 RLN1P04808 185 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 ATP1A1P05023 1023 aaKnown RBP3.8□□□□□ -1.8
VPS29-205ENST00000548539 MYL6BP14649 208 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 AMD1P17707 334 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 CASTP20810 708 aaKnown RBP3.8□□□□□ -1.8
VPS29-205ENST00000548539 HSD17B3P37058 310 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 RGS7P49802 495 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 GMPSP49915 693 aaPredicted RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms