RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PTTG2Q9NZH5 202 aa18.03■□□□□ 0.48
PRPF40B-208ENST00000548436 INVSQ9Y283 1065 aa18.03■□□□□ 0.48
PRPF40B-208ENST00000548436 AP2A2O94973 939 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 EPCAMP16422 314 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 HALP42357 657 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 GJA8P48165 433 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 TUBA4AP68366 448 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 CHRNB3Q05901 458 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 CHIT1Q13231 466 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 CBX2Q14781 532 aaPredicted RBP18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 KCTD21Q4G0X4 260 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 PRSS36Q5K4E3 855 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 OTUD3Q5T2D3 398 aaPredicted RBP18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 GCNT7Q6ZNI0 430 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 ANKRD46Q86W74 232 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 FOXJ1Q92949 421 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 TMBIM1Q969X1 311 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 MPP4Q96JB8 637 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 SH3GL1Q99961 368 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 KCNH6Q9H252 994 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 MARK1Q9P0L2 795 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 LIMD1Q9UGP4 676 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 IL36AQ9UHA7 158 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 MAN2B2Q9Y2E5 1009 aa18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 MAGED1Q9Y5V3 778 aaPredicted RBP18.02■□□□□ 0.48
PRPF40B-208ENST00000548436 CXCR6O00574 342 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 DEAF1O75398 565 aaPredicted RBP18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 TCF3P15923 654 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 HOXB9P17482 250 aaPredicted RBP18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 AMD1P17707 334 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 CD22P20273 847 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 S100A3P33764 101 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 CTNNB1P35222 781 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 CTSCP53634 463 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 ABRQ12979 859 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 LRIF1Q5T3J3 769 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 FRG2Q64ET8 278 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 B3GNT6Q6ZMB0 384 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 CYP2U1Q7Z449 544 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 TECPR1Q7Z6L1 1165 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 TNIP2Q8NFZ5 429 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 ING5Q8WYH8 240 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 APOLD1Q96LR9 279 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 FRG2BQ96QU4 278 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 ZSCAN5AQ9BUG6 496 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 UTS2RQ9UKP6 389 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 PCDHGA11Q9Y5H2 935 aa18.02■□□□□ 0.47
PRPF40B-208ENST00000548436 A0A096LPI6 279 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 ARHGEF33A8MVX0 844 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 NPIPB8E9PQR5 432 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 H0Y858 1186 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 ERN1O75460 977 aaKnown RBP18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 LRATO95237 230 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 FTH1P02794 183 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 GSNP06396 782 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 JUPP14923 745 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 CDH2P19022 906 aaPredicted RBP18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 PTPN6P29350 595 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 BMPR1AP36894 532 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 NNMTP40261 264 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 CDKN2CP42773 168 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 MTHFRP42898 656 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 GZMMP51124 257 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 ADARB1P78563 741 aaKnown RBP18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 PGS1Q32NB8 556 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 ZNF805Q5CZA5 627 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 ZNF697Q5TEC3 545 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 NECAB2Q7Z6G3 386 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 GRASPQ7Z6J2 395 aaPredicted RBP18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 MICU2Q8IYU8 434 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 LILRA3Q8N6C8 439 aaPredicted RBP18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 RASGEF1AQ8N9B8 481 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 SPPL3Q8TCT6 385 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 BTN2A2Q8WVV5 523 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 GFM2Q969S9 779 aaKnown RBP18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 FBXL8Q96CD0 374 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 LRRC3BQ96PB8 259 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 CPPED1Q9BRF8 314 aaPredicted RBP18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 UGT2B28Q9BY64 529 aa18.01■□□□□ 0.47
PRPF40B-208ENST00000548436 SERTM1A2A2V5 107 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 TRIM64A6NGJ6 449 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 TRIM64CA6NLI5 447 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 C16orf96A6NNT2 1141 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 TSPAN6O43657 245 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 BMP10O95393 424 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 GSTM1P09488 218 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 GSTM4Q03013 218 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 ATG9BQ674R7 924 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 USP51Q70EK9 711 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 DPPA4Q7L190 304 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 SPRED2Q7Z698 418 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 PATL1Q86TB9 770 aaKnown RBP18■□□□□ 0.47
PRPF40B-208ENST00000548436 CALHM3Q86XJ0 350 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 RAVER1Q8IY67 606 aaKnown RBP18■□□□□ 0.47
PRPF40B-208ENST00000548436 TESCQ96BS2 214 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 HHIPQ96QV1 700 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 GPRC5BQ9NZH0 403 aa18■□□□□ 0.47
PRPF40B-208ENST00000548436 NFKBIL1Q9UBC1 381 aaPredicted RBP18■□□□□ 0.47
PRPF40B-208ENST00000548436 CIDEBQ9UHD4 219 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms