RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 KIAA1143Q96AT1 154 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 LGALS12Q96DT0 336 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 L3HYPDHQ96EM0 354 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 TNIP3Q96KP6 325 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 FAM213AQ9BRX8 229 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PRKD2Q9BZL6 878 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 NTN4Q9HB63 628 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 CSNK1G1Q9HCP0 422 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SLC52A3Q9NQ40 469 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 C12orf4Q9NQ89 552 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ABI2Q9NYB9 513 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 SAE1Q9UBE0 346 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 HCSTQ9UBK5 93 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 DNAJB9Q9UBS3 223 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PHF11Q9UIL8 331 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 DNMT3LQ9UJW3 386 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 TLK1Q9UKI8 766 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 CFL2Q9Y281 166 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 LYVE1Q9Y5Y7 322 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 RNF215Q9Y6U7 377 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 RANBP2P49792 3224 aaKnown RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 GRM6O15303 877 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 NOS1APO75052 506 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 EEDO75530 441 aaKnown RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 GOSR1O95249 250 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 TSPAN12O95859 305 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 C1QBP02746 253 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 LTFP02788 710 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 RPL10P27635 214 aaKnown RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 SOX11P35716 441 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 TGFBR2P37173 567 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 HNF4AP41235 474 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SLC9A3P48764 834 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 HCAR3P49019 387 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 YBEYP58557 167 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 DSTNP60981 165 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 RBP5P82980 135 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PCDH1Q08174 1060 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ORC1Q13415 861 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PKDCCQ504Y2 493 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 CAPN13Q6MZZ7 669 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 CORO6Q6QEF8 472 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 EFL1Q7Z2Z2 1120 aaKnown RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 SPATA19Q7Z5L4 167 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SPRED2Q7Z698 418 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ASPGQ86U10 573 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ZBTB46Q86UZ6 589 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PLD3Q8IV08 490 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 GPALPP1Q8IXQ4 340 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 DPP10Q8N608 796 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 Q8N9G6 341 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 FAM156AQ8NDB6 213 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 OR52K2Q8NGK3 314 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PSMA8Q8TAA3 256 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 JOSD2Q8TAC2 188 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 NDNFQ8TB73 568 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 CHTF18Q8WVB6 975 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 KLHL6Q8WZ60 621 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SLC7A6Q92536 515 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 C18orf25Q96B23 403 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 FUBP3Q96I24 572 aaKnown RBP eCLIP5.14□□□□□ -1.59
USP28-213ENST00000544967 LRCH3Q96II8 777 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SPATA17Q96L03 361 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 KLHL5Q96PQ7 755 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PPP1R16BQ96T49 567 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 MBOAT4Q96T53 435 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 CDX2Q99626 313 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 C17orf62Q9BQA9 187 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ACBD6Q9BR61 282 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PAAF1Q9BRP4 392 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PI4K2AQ9BTU6 479 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ACAT2Q9BWD1 397 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 LRRC3Q9BY71 257 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 RACGAP1Q9H0H5 632 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 TMEM168Q9H0V1 697 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 BRD9Q9H8M2 597 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 GORASP2Q9H8Y8 452 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SDR39U1Q9NRG7 319 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 GIMAP4Q9NUV9 329 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SCN3BQ9NY72 215 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 MAP10Q9P2G4 905 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 GLS2Q9UI32 602 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PCDHGB6Q9Y5F9 930 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PCDHGA8Q9Y5G5 932 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 KLF2Q9Y5W3 355 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 PLXND1Q9Y4D7 1925 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SPTBN5Q9NRC6 3674 aaKnown RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 OR2A25A4D2G3 310 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 NEMP1O14524 444 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ZBTB24O43167 697 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 DPM1O60762 260 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 MFN2O95140 757 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 HNRNPA1P09651 372 aaKnown RBP eCLIP5.14□□□□□ -1.59
USP28-213ENST00000544967 NCF1P14598 390 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 PCSK2P16519 638 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 TFE3P19532 575 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 MSX2P35548 267 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 LTBRP36941 435 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PIK3CBP42338 1070 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 HAAOP46952 286 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms