RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ART5Q96L15 291 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 DIABLOQ9NR28 239 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 DUX4Q9UBX2 424 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 FPGTO14772 594 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 KIAA0513O60268 411 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 RPP40O75818 363 aaKnown RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 ALDH9A1P49189 494 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 RPP38P78345 283 aaKnown RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 SELENBP1Q13228 472 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 USP30Q70CQ3 517 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 FCRL5Q96RD9 977 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 TCF25Q9BQ70 676 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 PTGFRNQ9P2B2 879 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 CDH7Q9ULB5 785 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 TNFRSF10AO00220 468 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 SLC2A2P11168 524 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 DNAJA1P31689 397 aaKnown RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 MAGEA6P43360 314 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 LILRA4P59901 499 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 IRF8Q02556 426 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 ST3GAL4Q11206 333 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 PAFAH1B3Q15102 231 aaKnown RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 UGT8Q16880 541 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 USP39Q53GS9 565 aaKnown RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 KIAA1614Q5VZ46 1190 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 FAM219BQ5XKK7 198 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 GHDCQ8N2G8 530 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 SLC37A3Q8NCC5 494 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 C2CD4AQ8NCU7 369 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 ADAMTS16Q8TE57 1224 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 PYURFQ96I23 114 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 UCK2Q9BZX2 261 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 IL1RAPQ9NPH3 570 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 RDH8Q9NYR8 311 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 ZIM2Q9NZV7 527 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 TRPC4Q9UBN4 977 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 EIF3KQ9UBQ5 218 aaKnown RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 CDRT1O95170 752 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 GDF5P43026 501 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 CAPZA2P47755 286 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 RPL6Q02878 288 aaKnown RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 GTF2H2Q13888 395 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 ADPRMQ3LIE5 342 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 CRTC2Q53ET0 693 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 GTF2H2CQ6P1K8 395 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 WDR48Q8TAF3 677 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 AP3S1Q92572 193 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 TMEM159Q96B96 161 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 C11orf24Q96F05 449 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 NECTIN4Q96NY8 510 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 ASPNQ9BXN1 380 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 TXNRD2Q9NNW7 524 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 BAIAP2Q9UQB8 552 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 TRPV2Q9Y5S1 764 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 TCRBV5S1A1TA0A578 114 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 AGAP5A6NIR3 686 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 SEC14L2O76054 403 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 SMIM10L2AP0DMW4 78 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 SMIM10L2BP0DMW5 78 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 ATP4BP51164 291 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 TRMT11Q7Z4G4 463 aaKnown RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 RDH12Q96NR8 316 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 SLC25A51Q9H1U9 297 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 MIEF1Q9NQG6 463 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 THUMPD1Q9NXG2 353 aaKnown RBP13.92□□□□□ -0.18
LIMS1-215ENST00000544547 ENOPH1Q9UHY7 261 aa13.92□□□□□ -0.18
LIMS1-215ENST00000544547 PRRC2BQ5JSZ5 2229 aaKnown RBP13.91□□□□□ -0.18
LIMS1-215ENST00000544547 PCDH8O95206 1070 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 TTPAP49638 278 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 ANXA11P50995 505 aaKnown RBP13.91□□□□□ -0.18
LIMS1-215ENST00000544547 ATP12AP54707 1039 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 PURAQ00577 322 aaKnown RBP13.91□□□□□ -0.18
LIMS1-215ENST00000544547 CREB5Q02930 508 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 ATAD3CQ5T2N8 411 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 SYVN1Q86TM6 617 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 DEDD2Q8WXF8 326 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 OR51E2Q9H255 320 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 ASB8Q9H765 288 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 SPACA6W5XKT8 324 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 DNAJB5O75953 348 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 FAM163BP0C2L3 166 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 CD72P21854 359 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 DCTP40126 519 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 BRCC3P46736 316 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 ACLYP53396 1101 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 GANABQ14697 944 aaKnown RBP13.91□□□□□ -0.18
LIMS1-215ENST00000544547 BICRALQ6AI39 1079 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 AFTPHQ6ULP2 937 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 LARP4Q71RC2 724 aaKnown RBP eCLIP13.91□□□□□ -0.18
LIMS1-215ENST00000544547 GOLM1Q8NBJ4 401 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 PSMG2Q969U7 264 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 NUSAP1Q9BXS6 441 aaKnown RBP13.91□□□□□ -0.18
LIMS1-215ENST00000544547 CHIAQ9BZP6 476 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 CTDSP2O14595 271 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 CKMT1AP12532 417 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 DARSP14868 501 aaKnown RBP13.91□□□□□ -0.18
LIMS1-215ENST00000544547 TGFBR1P36897 503 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 GPR15P49685 360 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 DAOAP59103 153 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 DSC3Q14574 896 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms