RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 RUBCNLQ9H714 662 aa17.05■□□□□ 0.32
CLSTN3-214ENST00000542663 ZNHIT6Q9NWK9 470 aaKnown RBP17.05■□□□□ 0.32
CLSTN3-214ENST00000542663 NXT1Q9UKK6 140 aaKnown RBP17.05■□□□□ 0.32
CLSTN3-214ENST00000542663 OR51F1A6NGY5 319 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 GOLGA6L19H0YKK7 550 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 QSOX1O00391 747 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 HPP00738 406 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 RBP3P10745 1247 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 RAB28P51157 221 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 TRIM14Q14142 442 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 ITIH4Q14624 930 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 YOD1Q5VVQ6 348 aaPredicted RBP17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 VRK3Q8IV63 474 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 CDKL3Q8IVW4 592 aaPredicted RBP17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 NR4A3Q92570 626 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 CCDC120Q96HB5 630 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 ZNF160Q9HCG1 818 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 LUC7LQ9NQ29 371 aaKnown RBP17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 CIDEBQ9UHD4 219 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 MAU2Q9Y6X3 613 aa17.04■□□□□ 0.32
CLSTN3-214ENST00000542663 FITM1A5D6W6 292 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 MFAP3LO75121 409 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 CD9P21926 228 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 PSMA3P25788 255 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 FOXN2P32314 431 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 SOX11P35716 441 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 TNFSF10P50591 281 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 CSE1LP55060 971 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 EIF3EP60228 445 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 KLC1Q07866 573 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 GRM7Q14831 915 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 POU6F1Q14863 301 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 SYTL3Q4VX76 610 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 FIGLAQ6QHK4 219 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 GDF7Q7Z4P5 450 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 TAX1BP1Q86VP1 789 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 SLC22A15Q8IZD6 547 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 STYXQ8WUJ0 223 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 C8orf44Q96CB5 159 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 MAGEB10Q96LZ2 347 aaPredicted RBP17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 IL17FQ96PD4 163 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 FERMT1Q9BQL6 677 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 CRB3Q9BUF7 120 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 PIH1D1Q9NWS0 290 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 PLA2G3Q9NZ20 509 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 IMPACTQ9P2X3 320 aa17.03■□□□□ 0.32
CLSTN3-214ENST00000542663 MACROD2A1Z1Q3 448 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 MROH6A6NGR9 719 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 PJA2O43164 708 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 KDM1AO60341 852 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 OR1I1O60431 355 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 CTSVO60911 334 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 SNRPB2P08579 225 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 ACPPP15309 386 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 MSNP26038 577 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 PTGER4P35408 488 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 ARG2P78540 354 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 PLOD1Q02809 727 aaPredicted RBP17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 SRSF11Q05519 484 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 ZC3H12BQ5HYM0 836 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 TCTE1Q5JU00 501 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 CCDC181Q5TID7 509 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 ATG9BQ674R7 924 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 DARS2Q6PI48 645 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 BNC2Q6ZN30 1099 aaPredicted RBP17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 STT3BQ8TCJ2 826 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 PPP1R2P1Q96PQ5 205 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 SELENOSQ9BQE4 189 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 TFR2Q9UP52 801 aa17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLSTN3-214ENST00000542663 PRICKLE3O43900 615 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 STK10O94804 968 aaKnown RBP17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 S1PR4O95977 384 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 TPM3P06753 285 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 ZGLP1P0C6A0 271 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 OR56A5P0C7T3 313 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 PRR35P0CG20 571 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 COX6A1P12074 109 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 HTR1EP28566 365 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 CCR7P32248 378 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 COPS2P61201 443 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 GTF3C1Q12789 2109 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 INAQ16352 499 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 ZNF630Q2M218 657 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 DNAJC21Q5F1R6 531 aaKnown RBP17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 FRMPD2BQ6IN97 320 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 C11orf63Q6NUN7 778 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 GFRALQ6UXV0 394 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 NLRP9Q7RTR0 991 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 MRGPRGQ86SM5 289 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 KBTBD2Q8IY47 623 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 TTC29Q8NA56 475 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 OR2L8Q8NGY9 312 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 BRIX1Q8TDN6 353 aaKnown RBP17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 SLC22A18Q96BI1 424 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 VPS50Q96JG6 964 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 TRIM8Q9BZR9 551 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 IL1RAPL1Q9NZN1 696 aa17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-214ENST00000542663 PTGFRNQ9P2B2 879 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms