RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 ALS2Q96Q42 1657 aa5.69□□□□□ -1.5
CD44-225ENST00000527326 THSD7AQ9UPZ6 1657 aa5.69□□□□□ -1.5
CD44-225ENST00000527326 NAV1Q8NEY1 1877 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 MYH9P35579 1960 aaKnown RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 PRORSD1PA6NEY8 169 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 B4DXG7 233 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 H0YIN7 160 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 DNASE2O00115 360 aaPredicted RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 KCNK1O00180 336 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 TM4SF5O14894 197 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 EREGO14944 169 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 EIF3DO15371 548 aaKnown RBP eCLIP5.68□□□□□ -1.5
CD44-225ENST00000527326 B4GAT1O43505 415 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 AIREO43918 545 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 SSX4O60224 188 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 BANF1O75531 89 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 RBBP9O75884 186 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 GSRP00390 522 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 IGLV1-40P01703 118 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 LCKP06239 509 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ADRB1P08588 477 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 NFICP08651 508 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 FGRP09769 529 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ACSM4P0C7M7 580 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 HSD17B1P14061 328 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 RAC2P15153 192 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CTPS1P17812 591 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 TNNI1P19237 187 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 PTAFRP25105 342 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 PSMB9P28065 219 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ALDH4A1P30038 563 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CD6P30203 668 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ADORA1P30542 326 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 OXTRP30559 389 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 RYKP34925 604 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ATP5C1P36542 298 aaKnown RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 NSFP46459 744 aaKnown RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 BRCC3P46736 316 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 GPR143P51810 404 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 BCAT1P54687 386 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CXCR4P61073 352 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 RRAS2P62070 204 aaPredicted RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 LSM3P62310 102 aaKnown RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 HERVK_113P63132 956 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 UBE2IP63279 158 aaKnown RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 GTF2BQ00403 316 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 PLIN5Q00G26 463 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 HSF2Q03933 536 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 EMX1Q04741 257 aaPredicted RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.68□□□□□ -1.5
CD44-225ENST00000527326 PRKAA1Q13131 559 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 TMEM132BQ14DG7 1078 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 EMC2Q15006 297 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 TRAM2Q15035 370 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 PPA1Q15181 289 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 GPR68Q15743 365 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 GPR19Q15760 415 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 SSX2Q16385 188 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 PFKFB4Q16877 469 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 C21orf62-AS1Q17RA5 79 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 SMTNL2Q2TAL5 461 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 LIN9Q5TKA1 542 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 LRRC38Q5VT99 294 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 KANK2Q63ZY3 851 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 RAP1GAP2Q684P5 730 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ARHGAP17Q68EM7 881 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 REP15Q6BDI9 236 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 SLFN12LQ6IEE8 588 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CES5AQ6NT32 575 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 C8orf82Q6P1X6 216 aaPredicted RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 BHLHB9Q6PI77 547 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CYP2R1Q6VVX0 501 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CATSPERGQ6ZRH7 1159 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 FAM183BPQ6ZVS7 135 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 TRILQ7L0X0 811 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 LHFPL3Q86UP9 236 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CPNE8Q86YQ8 564 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 C10orf107Q8IVU9 208 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ARMC10Q8N2F6 343 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CAMKK1Q8N5S9 505 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CDYL2Q8N8U2 506 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ZNF557Q8N988 423 aaPredicted RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 C1orf127Q8N9H9 656 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ANKRD52Q8NB46 1076 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 GLIS1Q8NBF1 620 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 FAM156AQ8NDB6 213 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 SETD9Q8NE22 299 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 AGBL3Q8NEM8 1001 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 SLC35B2Q8TB61 432 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 ZNF431Q8TF32 576 aaPredicted RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 FBLIM1Q8WUP2 373 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CPNE4Q96A23 557 aaPredicted RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 ZC3HAV1LQ96H79 300 aaKnown RBP5.68□□□□□ -1.5
CD44-225ENST00000527326 TMEM41AQ96HV5 264 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 FAM84AQ96KN4 292 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 CMTM3Q96MX0 182 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 LINC00052Q96N35 136 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 NEDD4LQ96PU5 975 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 SLITRK1Q96PX8 696 aa5.68□□□□□ -1.5
CD44-225ENST00000527326 TRNT1Q96Q11 434 aaKnown RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms