RNA–Protein interactions for RNA: ENST00000523125.5

VEGFA-223, Transcript of vascular endothelial growth factor A, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 541 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-223	ENST00000523125	KLRB1	Q12918	225 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	DHX34	Q14147	1143 aa	Known RBP	11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	SF1	Q15637	639 aa	Known RBP	11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	CASC4	Q6P4E1	433 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	CNST	Q6PJW8	725 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	FIGLA	Q6QHK4	219 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	MCAT	Q8IVS2	390 aa	Known RBP	11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	SPNS2	Q8IVW8	549 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	NAT8L	Q8N9F0	302 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	GSDMB	Q8TAX9	411 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	PROKR1	Q8TCW9	393 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	SIGLEC10	Q96LC7	697 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	NAP1L3	Q99457	506 aa	Predicted RBP	11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	SLC30A3	Q99726	388 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	RAB11FIP5	Q9BXF6	653 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	XAB2	Q9HCS7	855 aa	Known RBP	11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	ENAM	Q9NRM1	1142 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	SLC22A11	Q9NSA0	550 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	SAMD15	Q9P1V8	674 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	SLC39A10	Q9ULF5	831 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	MED16	Q9Y2X0	877 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	PCDHGA9	Q9Y5G4	932 aa	Known RBP	11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	KLK4	Q9Y5K2	254 aa		11.89	□□□□□ -0.51
VEGFA-223	ENST00000523125	SHANK1	Q9Y566	2161 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	TARM1	B6A8C7	271 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125		C9J4A7	227 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125		H3BMM5	538 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	CTSV	O60911	334 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	ERG	P11308	486 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	PKM	P14618	531 aa	Known RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	PAM	P19021	973 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	CHRM3	P20309	590 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	CCNF	P41002	786 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	CLCN7	P51798	805 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	FOXL2	P58012	376 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	YBX1	P67809	324 aa	Known RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	DCD	P81605	110 aa	Known RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	FOXK1	P85037	733 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	CTBP1	Q13363	440 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	FASTK	Q14296	549 aa	Known RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	IGFBP7	Q16270	282 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	CYP2A13	Q16696	494 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	NKAIN1	Q4KMZ8	207 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	ACSBG2	Q5FVE4	666 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	MLIP	Q5VWP3	458 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	PAPD7	Q5XG87	772 aa	Known RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	ZNF470	Q6ECI4	717 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	MRPL14	Q6P1L8	145 aa	Known RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	ZNF549	Q6P9A3	640 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	TTC23L	Q6PF05	361 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	DENND6A	Q8IWF6	608 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	OR2A1	Q8NGT9	310 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	SKA2	Q8WVK7	121 aa	Predicted RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	ZNF669	Q96BR6	464 aa	Predicted RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	ZNF285	Q96NJ3	590 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	DHRS4	Q9BTZ2	278 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	SLC25A23	Q9BV35	468 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	ACSS2	Q9NR19	701 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	INTS10	Q9NVR2	710 aa	Known RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	TSR3	Q9UJK0	312 aa	Known RBP	11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	SNX12	Q9UMY4	172 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	SRPK3	Q9UPE1	567 aa		11.88	□□□□□ -0.51
VEGFA-223	ENST00000523125	ARHGEF33	A8MVX0	844 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	CES2	O00748	559 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	PFDN6	O15212	129 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	KIF5C	O60282	957 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	NRP2	O60462	931 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	PSIP1	O75475	530 aa	Known RBP	11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	USP1	O94782	785 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	FKBP9	O95302	570 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	ONECUT2	O95948	504 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	MCM3	P25205	808 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	FNTA	P49354	379 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	ATP1A4	Q13733	1029 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	SSPN	Q14714	243 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	SLC9A5	Q14940	896 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	KLHL38	Q2WGJ6	581 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	RNASEH2B	Q5TBB1	312 aa	Known RBP	11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	TEX19	Q8NA77	164 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	OR2L3	Q8NG85	312 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	GIMAP7	Q8NHV1	300 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	ZUFSP	Q96AP4	578 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	FOPNL	Q96NB1	174 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	MIPEP	Q99797	713 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	C17orf62	Q9BQA9	187 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	NDC1	Q9BTX1	674 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	FBXO6	Q9NRD1	293 aa	Predicted RBP	11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	TXLNG	Q9NUQ3	528 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	INTS7	Q9NVH2	962 aa	Known RBP	11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	TRMT1	Q9NXH9	659 aa	Known RBP	11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	MRFAP1	Q9Y605	127 aa		11.87	□□□□□ -0.51
VEGFA-223	ENST00000523125	UTP20	O75691	2785 aa	Known RBP	11.86	□□□□□ -0.51
VEGFA-223	ENST00000523125	MYO1C	O00159	1063 aa		11.86	□□□□□ -0.51
VEGFA-223	ENST00000523125	ZSCAN12	O43309	604 aa		11.86	□□□□□ -0.51
VEGFA-223	ENST00000523125	MED26	O95402	600 aa		11.86	□□□□□ -0.51
VEGFA-223	ENST00000523125	UMOD	P07911	640 aa		11.86	□□□□□ -0.51
VEGFA-223	ENST00000523125	ATXN8OS	P0DMR3	200 aa		11.86	□□□□□ -0.51
VEGFA-223	ENST00000523125	OTX2	P32243	289 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms