RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 E7EQ34 232 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 PRICKLE3O43900 615 aaPredicted RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 CREG1O75629 220 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 OR2B3O76000 313 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 SEC31AO94979 1220 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 MATN4O95460 622 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 SYF2O95926 243 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 AHSGP02765 367 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 MT-ND3P03897 115 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 RPN2P04844 631 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 ITGB2P05107 769 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 KLK3P07288 261 aaPredicted RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 RORAP35398 523 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 RPL21P46778 160 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 ADARP55265 1226 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 CDKN2DP55273 166 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 POLE2P56282 527 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 TRADDQ15628 312 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 SLC5A12Q1EHB4 618 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 SPANXN3Q5MJ09 141 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 MLIPQ5VWP3 458 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 CYB5D1Q6P9G0 228 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 CAPN12Q6ZSI9 719 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 PIWIL4Q7Z3Z4 852 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 BPHLQ86WA6 291 aaPredicted RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 PTRH1Q86Y79 214 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 MCATQ8IVS2 390 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 DSELQ8IZU8 1212 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 DTWD1Q8N5C7 304 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 C2CD4AQ8NCU7 369 aaPredicted RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 LSM14AQ8ND56 463 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 OR9A1PQ8NGU1 263 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 OR8K5Q8NH50 307 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 INPP5DQ92835 1189 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 RAD51AP1Q96B01 352 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 AARSD1Q9BTE6 412 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 EFHD1Q9BUP0 239 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 LATS2Q9NRM7 1088 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 ZC3H7BQ9UGR2 993 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 DHRS7Q9Y394 339 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 PCDHB3Q9Y5E6 796 aa11.06□□□□□ -0.64
VCAN-212ENST00000515397 GCN1Q92616 2671 aaKnown RBP11.06□□□□□ -0.64
VCAN-212ENST00000515397 BOD1L1Q8NFC6 3051 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 H3BMH7 237 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 K7EM74 188 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 RAD51CO43502 376 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 KDM1AO60341 852 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 CTSVO60911 334 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 ZIC2O95409 532 aaPredicted RBP11.05□□□□□ -0.64
VCAN-212ENST00000515397 CAPN1P07384 714 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 NR1D1P20393 614 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 ALAS2P22557 587 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 PTPN4P29074 926 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 CCR10P46092 362 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 RPS15P62841 145 aaKnown RBP11.05□□□□□ -0.64
VCAN-212ENST00000515397 PDIA2Q13087 525 aaKnown RBP11.05□□□□□ -0.64
VCAN-212ENST00000515397 CHAF1BQ13112 559 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 IL10RAQ13651 578 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 MORF4L2Q15014 288 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 HIF1AQ16665 826 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 TEDDM1Q5T9Z0 273 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 SYDE1Q6ZW31 735 aaPredicted RBP11.05□□□□□ -0.64
VCAN-212ENST00000515397 ZNF605Q86T29 641 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 SYTL1Q8IYJ3 562 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 GPR135Q8IZ08 494 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 PDIK1LQ8N165 341 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 ENDOVQ8N8Q3 282 aaKnown RBP11.05□□□□□ -0.64
VCAN-212ENST00000515397 SPATA4Q8NEY3 305 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 CD200R1Q8TD46 325 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 CALML6Q8TD86 181 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 EEF1AKMT1Q8WVE0 214 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 SNF8Q96H20 258 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 FAM167BQ9BTA0 163 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 EURLQ9NYK6 297 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 KCND3Q9UK17 655 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 VPS9D1Q9Y2B5 631 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 TEX264Q9Y6I9 313 aa11.05□□□□□ -0.64
VCAN-212ENST00000515397 LOC105369274A0A096LPK9 316 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 LOC102723532A0A0G2JNH3 316 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 A0A0J9YVX5 310 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 CCDC188H7C350 402 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 PSIP1O75475 530 aaKnown RBP11.04□□□□□ -0.64
VCAN-212ENST00000515397 DNAJB5O75953 348 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 TTC4O95801 387 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 SAT1P21673 171 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 CCNFP41002 786 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 ARL4CP56559 192 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 VSX2P58304 361 aaPredicted RBP11.04□□□□□ -0.64
VCAN-212ENST00000515397 ETF1P62495 437 aaKnown RBP11.04□□□□□ -0.64
VCAN-212ENST00000515397 MC1RQ01726 317 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 CYP2A13Q16696 494 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 ARMC3Q5W041 872 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 FRMPD2BQ6IN97 320 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 PAQR3Q6TCH7 311 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 MBOAT1Q6ZNC8 495 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 OR4N4Q8N0Y3 316 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 METTL27Q8N6F8 245 aaPredicted RBP11.04□□□□□ -0.64
VCAN-212ENST00000515397 GPATCH11Q8N954 259 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 FBXO36Q8NEA4 188 aa11.04□□□□□ -0.64
VCAN-212ENST00000515397 OR2A1Q8NGT9 310 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms