RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 GBA2Q9HCG7 927 aaPredicted RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 NGRNQ9NPE2 291 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 COL20A1Q9P218 1284 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GULP1Q9UBP9 304 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CHRNA9Q9UGM1 479 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 WASF3Q9UPY6 502 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GINS2Q9Y248 185 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 KIF13BQ9NQT8 1826 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 FXYD6-FXYD2A0A087WZ82 144 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CAPN8A6NHC0 703 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 SOBPA7XYQ1 873 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 OR7A17O14581 309 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PHOX2AO14813 284 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 YY2O15391 372 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ALDH1A2O94788 518 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 NDST3O95803 873 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 AIFM1O95831 613 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 LALBAP00709 142 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 FABP3P05413 133 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 MAPTP10636 758 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 ZNF35P13682 527 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GDI1P31150 447 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PTPN7P35236 360 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 MAP2K4P45985 399 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 AFF3P51826 1226 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 LSM3P62310 102 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 ERVK-25P63136 954 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 EEF1A1P68104 462 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 IL13RA1P78552 427 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 EEF1A2Q05639 463 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 ELOAQ14241 798 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 DSC3Q14574 896 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PTPAQ15257 358 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 QRICH1Q2TAL8 776 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ABCA11PQ4W5N1 156 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 TOR1AIP1Q5JTV8 583 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 HECTD2Q5U5R9 776 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 EEF1A1P5Q5VTE0 462 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ANGEL2Q5VTE6 544 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 LIPMQ5VYY2 423 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 AWAT2Q6E213 333 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CES5AQ6NT32 575 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 NEPROQ6NW34 567 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CNKSR3Q6P9H4 555 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 SH3RF1Q7Z6J0 888 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 TRMT2AQ8IZ69 625 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 PIAS4Q8N2W9 510 aaPredicted RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 PGBD3Q8N328 593 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PHTF2Q8N3S3 785 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 NETO2Q8NC67 525 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CAMKVQ8NCB2 501 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PLPP5Q8NEB5 264 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 B3GNT7Q8NFL0 401 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CHTF18Q8WVB6 975 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CNOT9Q92600 299 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 ART4Q93070 314 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ISOC1Q96CN7 298 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 KCTD12Q96CX2 325 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 RAB3CQ96E17 227 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 S100A16Q96FQ6 103 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 TXNDC15Q96J42 360 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PPM1MQ96MI6 270 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PGLYRP2Q96PD5 576 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 MOGAT1Q96PD6 335 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 OR52B2Q96RD2 323 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 NUDT9Q9BW91 350 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ERVK-6Q9BXR3 956 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 FXYD6Q9H0Q3 95 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PCIF1Q9H4Z3 704 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PTGES2Q9H7Z7 377 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 EMC7Q9NPA0 242 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PLCXD1Q9NUJ7 323 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ARL8BQ9NVJ2 186 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PAQR5Q9NXK6 330 aaPredicted RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.51□□□□□ -1.85
USP53-205ENST00000509769 ERVK-18Q9QC07 812 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GMEB2Q9UKD1 530 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 MRTO4Q9UKD2 239 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 SLCO1B1Q9Y6L6 691 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CCDC163A0A0D9SF12 145 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TESPA1A2RU30 521 aaPredicted RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 UNCXA6NJT0 531 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 FAM170BA6NMN3 283 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 KBTBD13C9JR72 458 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 H7C417 338 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DPYSL4O14531 572 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ADAMTS3O15072 1205 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NCK2O43639 380 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ZNF207O43670 478 aaKnown RBP3.5□□□□□ -1.85
USP53-205ENST00000509769 NRP2O60462 931 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 NIPSNAP2O75323 286 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 TAF5LO75529 589 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DEDDO75618 318 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 DGKIO75912 1065 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 CRHP06850 196 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 APRTP07741 180 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 HOXC6P09630 235 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 SPP1P10451 314 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 RBP3P10745 1247 aa3.5□□□□□ -1.85
USP53-205ENST00000509769 ITGA4P13612 1032 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms