RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	NACC2	Q96BF6	587 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	TMA16	Q96EY4	203 aa	Known RBP	4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	SERAC1	Q96JX3	654 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	TIGD1	Q96MW7	591 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	SPAG5	Q96R06	1193 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	CCNL2	Q96S94	520 aa	Predicted RBP	4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	OSBPL9	Q96SU4	736 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	PSMB7	Q99436	277 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	TXLNGY	Q9BZA5	131 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	MUC13	Q9H3R2	512 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	FZD3	Q9NPG1	666 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	ACP6	Q9NPH0	428 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	SLCO3A1	Q9UIG8	710 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	CFAP45	Q9UL16	551 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	RAB21	Q9UL25	225 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	PCDHGB4	Q9UN71	923 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	PLA2G4C	Q9UP65	541 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	HS3ST2	Q9Y278	367 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	DRG1	Q9Y295	367 aa	Known RBP	4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	CHST2	Q9Y4C5	530 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	MAGED1	Q9Y5V3	778 aa	Predicted RBP	4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	ATR	Q13535	2644 aa		4.25	□□□□□ -1.73
VPS52-222	ENST00000495981	PRRC2C	Q9Y520	2896 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ACAN	P16112	2415 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	SVIL	O95425	2214 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981		A0A1W2PQM1	296 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	TARSL2	A2RTX5	802 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	LRRC72	A6NJI9	287 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	BECN2	A8MW95	431 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	GTPBP1	O00178	669 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	TLR4	O00206	839 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ALOX15B	O15296	676 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	NKX2-8	O15522	239 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	STX10	O60499	249 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	DAB1	O75553	588 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	IPO13	O94829	963 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	PDHA1	P08559	390 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	CDK4	P11802	303 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	LYL1	P12980	280 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	CKMT2	P17540	419 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	GNLY	P22749	145 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	PSMA4	P25789	261 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	APOBEC3A	P31941	199 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ARRB1	P49407	418 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	MLLT10	P55197	1068 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ST8SIA6	P61647	398 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	YWHAE	P62258	255 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ECT2L	Q008S8	904 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	CNTN1	Q12860	1018 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	OVGP1	Q12889	678 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	LRMP	Q12912	555 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	FOXL1	Q12952	345 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	MPP3	Q13368	585 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	THOC5	Q13769	683 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	HLX	Q14774	488 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	P3H1	Q32P28	736 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	POM121L1P	Q3SYA9	428 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	C5orf22	Q49AR2	442 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	PDCD4	Q53EL6	469 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	TPRG1L	Q5T0D9	272 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	CFAP58	Q5T655	872 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ZNF658	Q5TYW1	1059 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	TCERG1L	Q5VWI1	586 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ANKRD40	Q6AI12	368 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	SFRP4	Q6FHJ7	346 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	RPUSD3	Q6P087	351 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	C22orf39	Q6P5X5	142 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	FOXR2	Q6PJQ5	311 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	OLFML1	Q6UWY5	402 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	KYAT3	Q6YP21	454 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	SZRD1	Q7Z422	152 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	VASH2	Q86V25	355 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	UNC45B	Q8IWX7	931 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	LGI2	Q8N0V4	545 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	SLC25A45	Q8N413	288 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	CARNMT1	Q8N4J0	409 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	DCAF4L2	Q8NA75	395 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ZNF548	Q8NEK5	533 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ARRDC3	Q96B67	414 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	SH3KBP1	Q96B97	665 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	SGF29	Q96ES7	293 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	TRMT61A	Q96FX7	289 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ATXN7L3B	Q96GX2	97 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	REXO5	Q96IC2	774 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	BTN2A3P	Q96KV6	586 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	HSFY1	Q96LI6	401 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	LRRC37B	Q96QE4	947 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	AMBRA1	Q9C0C7	1298 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	DNAI2	Q9GZS0	605 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	MIS12	Q9H081	205 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	INTS2	Q9H0H0	1204 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	SEC61A2	Q9H9S3	476 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ZNF71	Q9NQZ8	489 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	FAM53C	Q9NYF3	392 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	TAS2R10	Q9NYW0	307 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ARMCX3	Q9UH62	379 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	ZFR2	Q9UPR6	939 aa	Known RBP	4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	KCTD3	Q9Y597	815 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	KIF26B	Q2KJY2	2108 aa		4.24	□□□□□ -1.73
VPS52-222	ENST00000495981	FN1	P02751	2386 aa	Known RBP	4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms