RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 PADI2Q9Y2J8 665 aa3.14□□□□□ -1.91
RFC4-213ENST00000489028 TMED3Q9Y3Q3 217 aa3.14□□□□□ -1.91
RFC4-213ENST00000489028 SNX8Q9Y5X2 465 aa3.14□□□□□ -1.91
RFC4-213ENST00000489028 DARSP14868 501 aaKnown RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 CDH3P22223 829 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 SP100P23497 879 aaPredicted RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 DSCR10P59022 87 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 HERV-K104P61576 105 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 IL11RAQ14626 422 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 SGSM1Q2NKQ1 1148 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 SNAI3Q3KNW1 292 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 FAAP20Q6NZ36 180 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 HOGA1Q86XE5 327 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 MMD2Q8IY49 270 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 VANGL1Q8TAA9 524 aaPredicted RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 SMAP2Q8WU79 429 aaPredicted RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 ZNRF4Q8WWF5 429 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 PIGBQ92521 554 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 SYN2Q92777 582 aaPredicted RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 PTERQ96BW5 349 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 C10orf90Q96M02 699 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 ZNF830Q96NB3 372 aaPredicted RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 GCNAQ96QF7 691 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 PYGO2Q9BRQ0 406 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 KLHL4Q9C0H6 718 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 FAM207AQ9NSI2 230 aaPredicted RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 DPP3Q9NY33 737 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 CHORDC1Q9UHD1 332 aaPredicted RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 ABT1Q9ULW3 272 aaKnown RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 TNNQ9UQP3 1299 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 TRIM17Q9Y577 477 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 PCNX3Q9H6A9 2034 aa3.13□□□□□ -1.91
RFC4-213ENST00000489028 COL2A1P02458 1487 aaPredicted RBP3.13□□□□□ -1.91
RFC4-213ENST00000489028 TP53BP1Q12888 1972 aaPredicted RBP3.12□□□□□ -1.91
RFC4-213ENST00000489028 A0A1W2PPQ1 181 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 C2orf81A6NN90 581 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 E9PQ18 207 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 ERAL1O75616 437 aaKnown RBP3.12□□□□□ -1.91
RFC4-213ENST00000489028 IGHV2-70P01814 119 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 CYP2A7P20853 494 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 RPL21P46778 160 aaKnown RBP3.12□□□□□ -1.91
RFC4-213ENST00000489028 PAX9P55771 341 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 GSDMDP57764 484 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 KRTAP10-3P60369 221 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 PRKG2Q13237 762 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 TNIP1Q15025 636 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 E2F5Q15329 346 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 CFAP161Q6P656 301 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 DOK6Q6PKX4 331 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 SLC25A47Q6Q0C1 308 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 NUP54Q7Z3B4 507 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 ADGRA1Q86SQ6 560 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 NUDT13Q86X67 352 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 THAP8Q8NA92 274 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 OR1L3Q8NH93 324 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 SLAMF9Q96A28 289 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 ZNF486Q96H40 463 aaPredicted RBP3.12□□□□□ -1.91
RFC4-213ENST00000489028 SFXN2Q96NB2 322 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 DGAT2Q96PD7 388 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 CCDC3Q9BQI4 270 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 CCDC68Q9H2F9 335 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 MAN2C1Q9NTJ4 1040 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 OLAHQ9NV23 265 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 PANK4Q9NVE7 773 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 HAO2Q9NYQ3 351 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 RPS6KA6Q9UK32 745 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 RNF150Q9ULK6 438 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 PPP1R3CQ9UQK1 317 aa3.12□□□□□ -1.91
RFC4-213ENST00000489028 MAGED1Q9Y5V3 778 aaPredicted RBP3.12□□□□□ -1.91
RFC4-213ENST00000489028 A0A1W2PR80 420 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 NEMP2A6NFY4 417 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 C15orf61A6NNL5 157 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 TRIM77I1YAP6 450 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 SPRY1O43609 319 aaPredicted RBP3.11□□□□□ -1.91
RFC4-213ENST00000489028 TIMM44O43615 452 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 PI15O43692 258 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 SEC24AO95486 1093 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 LINGO3P0C6S8 592 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 PFKFB1P16118 471 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 MMP12P39900 470 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 MATR3P43243 847 aaKnown RBP eCLIP3.11□□□□□ -1.91
RFC4-213ENST00000489028 MAPK12P53778 367 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 HSPB3Q12988 150 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 KCTD2Q14681 263 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 SLC1A5Q15758 541 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 HLA-BQ31612 363 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 FASTKD1Q53R41 847 aaKnown RBP3.11□□□□□ -1.91
RFC4-213ENST00000489028 BMP2KLQ5H9B9 411 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 C6orf163Q5TEZ5 329 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 BSPRYQ5W0U4 402 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 FIP1L1Q6UN15 594 aaKnown RBP3.11□□□□□ -1.91
RFC4-213ENST00000489028 FAM198BQ6UWH4 519 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 METTL7BQ6UX53 244 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 NIPA2Q8N8Q9 360 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 CCDC89Q8N998 374 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 SYT2Q8N9I0 419 aaPredicted RBP3.11□□□□□ -1.91
RFC4-213ENST00000489028 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.11□□□□□ -1.91
RFC4-213ENST00000489028 OR10G8Q8NGN5 311 aa3.11□□□□□ -1.91
RFC4-213ENST00000489028 SNRNP27Q8WVK2 155 aaKnown RBP3.11□□□□□ -1.91
RFC4-213ENST00000489028 NSMCE3Q96MG7 304 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms