RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 PEX13Q92968 403 aa17.68■□□□□ 0.42
HDAC6-231ENST00000488905 CARD6Q9BX69 1037 aa17.68■□□□□ 0.42
HDAC6-231ENST00000488905 WDR54Q9H977 334 aa17.68■□□□□ 0.42
HDAC6-231ENST00000488905 ZBTB20Q9HC78 741 aaPredicted RBP17.68■□□□□ 0.42
HDAC6-231ENST00000488905 SLC6A20Q9NP91 592 aa17.68■□□□□ 0.42
HDAC6-231ENST00000488905 INTS7Q9NVH2 962 aaKnown RBP17.68■□□□□ 0.42
HDAC6-231ENST00000488905 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.68■□□□□ 0.42
HDAC6-231ENST00000488905 PCDHGA10Q9Y5H3 936 aa17.68■□□□□ 0.42
HDAC6-231ENST00000488905 A0A0U1RQJ8 604 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 ANKUB1A6NFN9 424 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 IQCF5A8MTL0 148 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 RASGRF2O14827 1237 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 DSCR3O14972 297 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 LIASO43766 372 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 ALBP02768 609 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 ITGA3P26006 1051 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 PPARGP37231 505 aaPredicted RBP17.67■□□□□ 0.42
HDAC6-231ENST00000488905 TMED2Q15363 201 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 CRB2Q5IJ48 1285 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 FCRL6Q6DN72 434 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 COX15Q7KZN9 410 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 NLRP9Q7RTR0 991 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 MAMDC2Q7Z304 686 aaPredicted RBP17.67■□□□□ 0.42
HDAC6-231ENST00000488905 CUZD1Q86UP6 607 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 TMEM139Q8IV31 216 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 TXLNBQ8N3L3 684 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 SPSB2Q99619 263 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 BAG1Q99933 345 aaPredicted RBP17.67■□□□□ 0.42
HDAC6-231ENST00000488905 SLC26A1Q9H2B4 701 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 CUTCQ9NTM9 273 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 CATSPERZQ9NTU4 200 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 CDC23Q9UJX2 597 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 CAPN6Q9Y6Q1 641 aa17.67■□□□□ 0.42
HDAC6-231ENST00000488905 WIPF3A6NGB9 483 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 SOCS6O14544 535 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 ALOX12BO75342 701 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 ONECUT2O95948 504 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 PIM1P11309 404 aaPredicted RBP17.66■□□□□ 0.42
HDAC6-231ENST00000488905 MCM3P25205 808 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 AOAHP28039 575 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 NKG7Q16617 165 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 ZC3H12BQ5HYM0 836 aaKnown RBP17.66■□□□□ 0.42
HDAC6-231ENST00000488905 TCTE1Q5JU00 501 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 SEL1L2Q5TEA6 688 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 YOD1Q5VVQ6 348 aaPredicted RBP17.66■□□□□ 0.42
HDAC6-231ENST00000488905 PRAMEF13Q5VWM6 474 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 OVCH1Q7RTY7 1134 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 KRT222Q8N1A0 295 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 PPHLN1Q8NEY8 458 aaKnown RBP17.66■□□□□ 0.42
HDAC6-231ENST00000488905 UBE2Q2Q8WVN8 375 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 BARD1Q99728 777 aaKnown RBP17.66■□□□□ 0.42
HDAC6-231ENST00000488905 WDR77Q9BQA1 342 aaPredicted RBP17.66■□□□□ 0.42
HDAC6-231ENST00000488905 SELENOSQ9BQE4 189 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 DESI2Q9BSY9 194 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 RAB11FIP5Q9BXF6 653 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 FRMD8P1Q9BZ68 369 aaPredicted RBP17.66■□□□□ 0.42
HDAC6-231ENST00000488905 MRM3Q9HC36 420 aaKnown RBP17.66■□□□□ 0.42
HDAC6-231ENST00000488905 ENAMQ9NRM1 1142 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 RAB6BQ9NRW1 208 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 SLC39A10Q9ULF5 831 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 SLC5A6Q9Y289 635 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 NTNG1Q9Y2I2 539 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 CSAG2Q9Y5P2 127 aa17.66■□□□□ 0.42
HDAC6-231ENST00000488905 COPG1Q9Y678 874 aaKnown RBP17.66■□□□□ 0.42
HDAC6-231ENST00000488905 PRMT5O14744 637 aaPredicted RBP17.65■□□□□ 0.42
HDAC6-231ENST00000488905 SLCO2B1O94956 709 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 CLDN1O95832 211 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 APRTP07741 180 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 GRIA3P42263 894 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 TTPAP49638 278 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 ELOAQ14241 798 aaKnown RBP17.65■□□□□ 0.42
HDAC6-231ENST00000488905 GRM7Q14831 915 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 SF1Q15637 639 aaKnown RBP17.65■□□□□ 0.42
HDAC6-231ENST00000488905 FIGLAQ6QHK4 219 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 LDB1Q86U70 411 aaPredicted RBP17.65■□□□□ 0.42
HDAC6-231ENST00000488905 TTC29Q8NA56 475 aaPredicted RBP17.65■□□□□ 0.42
HDAC6-231ENST00000488905 PPP4R1Q8TF05 950 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.65■□□□□ 0.42
HDAC6-231ENST00000488905 C5orf34Q96MH7 638 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 ZNF285Q96NJ3 590 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 MARCH4Q9P2E8 410 aaPredicted RBP17.65■□□□□ 0.42
HDAC6-231ENST00000488905 CTSFQ9UBX1 484 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 ANAPC5Q9UJX4 755 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 NXT1Q9UKK6 140 aaKnown RBP17.65■□□□□ 0.42
HDAC6-231ENST00000488905 NOVA2Q9UNW9 492 aaKnown RBP17.65■□□□□ 0.42
HDAC6-231ENST00000488905 ZNF148Q9UQR1 794 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 HS3ST3B1Q9Y662 390 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 CROCCQ5TZA2 2017 aa17.65■□□□□ 0.42
HDAC6-231ENST00000488905 FITM1A5D6W6 292 aa17.64■□□□□ 0.41
HDAC6-231ENST00000488905 FKBP9O95302 570 aa17.64■□□□□ 0.41
HDAC6-231ENST00000488905 ETS1P14921 441 aa17.64■□□□□ 0.41
HDAC6-231ENST00000488905 GLRBP48167 497 aa17.64■□□□□ 0.41
HDAC6-231ENST00000488905 HIF1AQ16665 826 aa17.64■□□□□ 0.41
HDAC6-231ENST00000488905 TUBB8Q3ZCM7 444 aa17.64■□□□□ 0.41
HDAC6-231ENST00000488905 SHISA6Q6ZSJ9 500 aa17.64■□□□□ 0.41
HDAC6-231ENST00000488905 PRUNE1Q86TP1 453 aa17.64■□□□□ 0.41
HDAC6-231ENST00000488905 METTL27Q8N6F8 245 aaPredicted RBP17.64■□□□□ 0.41
HDAC6-231ENST00000488905 PANX3Q96QZ0 392 aa17.64■□□□□ 0.41
HDAC6-231ENST00000488905 SOX17Q9H6I2 414 aaPredicted RBP17.64■□□□□ 0.41
HDAC6-231ENST00000488905 GNPTGQ9UJJ9 305 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms