RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 CRYMQ14894 314 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 KYNUQ16719 465 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 HSP90AA5PQ58FG0 334 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 GPRC6AQ5T6X5 926 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 PTRHD1Q6GMV3 140 aaKnown RBP8.51□□□□□ -1.05
USP4-213ENST00000488520 UNC5AQ6ZN44 842 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 TRMT10CQ7L0Y3 403 aaKnown RBP8.51□□□□□ -1.05
USP4-213ENST00000488520 CHST15Q7LFX5 561 aaPredicted RBP8.51□□□□□ -1.05
USP4-213ENST00000488520 ARHGAP22Q7Z5H3 698 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 LRRTM4Q86VH4 590 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 TRAPPC5Q8IUR0 188 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 CTAGE3PQ8IX95 158 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 NXPE1Q8N323 547 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 OR13J1Q8NGT2 312 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 GPR150Q8NGU9 434 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 WFDC12Q8WWY7 111 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 C9orf72Q96LT7 481 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 TEFMQ96QE5 360 aaKnown RBP8.51□□□□□ -1.05
USP4-213ENST00000488520 OR2M4Q96R27 311 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 EFHD1Q9BUP0 239 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 ARFGAP3Q9NP61 516 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 ZDHHC18Q9NUE0 388 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 VPS18Q9P253 973 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.51□□□□□ -1.05
USP4-213ENST00000488520 SLC17A4Q9Y2C5 497 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 PRKAB1Q9Y478 270 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 V9GYY5 206 aaPredicted RBP8.51□□□□□ -1.05
USP4-213ENST00000488520 SVILO95425 2214 aa8.51□□□□□ -1.05
USP4-213ENST00000488520 SNRNP200O75643 2136 aaKnown RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 LRBAP50851 2863 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 LOC100996750A0A140TA64 210 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 ZCWPW2A0A1B0GU75 182 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 A1L4Q6 167 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 KLHL33A6NCF5 533 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 GOLGA8KD6RF30 607 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 E5RI56 91 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 H3BMM5 538 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 MKRN2OSH3BPM6 223 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 GOLGA8TH3BQL2 631 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 LINC01387J3KSC0 135 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 POLR1CO15160 346 aaPredicted RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 NUAK1O60285 661 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 SNX2O60749 519 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 VPS4BO75351 444 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 MTX2O75431 263 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 AP2A2O94973 939 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 FTH1P02794 183 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 ERVK-10P10266 1014 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 ACPPP15309 386 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 ZNF28P17035 718 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 CHRM3P20309 590 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 OGNP20774 298 aaKnown RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 PSMA3P25788 255 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 SSTR1P30872 391 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 STAT5AP42229 794 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 FASLGP48023 281 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 CD97P48960 835 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 PMS2P54278 862 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 HHEXQ03014 270 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 FOXM1Q08050 763 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 ITIH4Q14624 930 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 INSCQ1MX18 579 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 PYCR3Q53H96 274 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 LGSNQ5TDP6 509 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 WDR93Q6P2C0 686 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 ASB18Q6ZVZ8 466 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 CYS1Q717R9 158 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 DET1Q7L5Y6 550 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 ADGRG6Q86SQ4 1221 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 LRRC6Q86X45 466 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 IGDCC3Q8IVU1 814 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 LRRN4CLQ8ND94 238 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 DDHD1Q8NEL9 900 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 CERS2Q96G23 380 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 COX14Q96I36 57 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 ELMO2Q96JJ3 720 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 PANX3Q96QZ0 392 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 TBC1D10AQ9BXI6 508 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 PARD6BQ9BYG5 372 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 KRTAP4-6Q9BYQ5 205 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 MRPL18Q9H0U6 180 aaKnown RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 TRIT1Q9H3H1 467 aaKnown RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 RRAGDQ9NQL2 400 aaPredicted RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 PRDM8Q9NQV8 689 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 FBXO8Q9NRD0 319 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 INTS10Q9NVR2 710 aaKnown RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 SMOXQ9NWM0 555 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 PDP2Q9P2J9 529 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 ATXN10Q9UBB4 475 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 TLK1Q9UKI8 766 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 CNOT6Q9ULM6 557 aaKnown RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 VPS4AQ9UN37 437 aa8.5□□□□□ -1.05
USP4-213ENST00000488520 TMEM184BQ9Y519 407 aaPredicted RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 PCYT1BQ9Y5K3 369 aaPredicted RBP8.5□□□□□ -1.05
USP4-213ENST00000488520 NUP210LQ5VU65 1888 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 A0A087WUV0 522 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 OR2AG2A6NM03 316 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 AGAP14A8MT82 685 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 PRMT5O14744 637 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 KPNA5O15131 536 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms